DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13793 and slc6a4b

DIOPT Version :9

Sequence 1:NP_609136.2 Gene:CG13793 / 34047 FlyBaseID:FBgn0031935 Length:583 Species:Drosophila melanogaster
Sequence 2:NP_001170930.1 Gene:slc6a4b / 664770 ZFINID:ZDB-GENE-060314-2 Length:591 Species:Danio rerio


Alignment Length:585 Identity:150/585 - (25%)
Similarity:246/585 - (42%) Gaps:107/585 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 NRGNWEKPTDYIFACFGLALKLDIFVASFWFF-----FNTGIFGMVPYLMYMVIYLVPIMVIHSY 70
            :|..|.|..|::.:..|.|:.|    .:.|.|     .|.|...::||::..|...||:..:...
Zfish    37 SRDKWSKKMDFLLSVIGFAVDL----GNVWRFPYICYQNGGGAFLIPYVLMAVFGGVPLFYMELA 97

  Fly    71 MGQFSSSGFISAFR-LSPLFKGMGYVSLFLTITLLIYYTIFAAVPLLFVLNSFRPTLPW-SCEGF 133
            :|||..:|.||.:: :.|:|||:|:....:.:.:..||....|..|.:..:||..|||| ||:  
Zfish    98 LGQFHRTGAISIWKHICPIFKGIGFAICIIALYVSFYYNTIIAWALFYFYSSFSSTLPWTSCD-- 160

  Fly   134 KSWQNDTIAKWSICNATIAEEVAKETENDT-YFYITNIHVPSVLYFKSHFESFQNDSELNDYE-- 195
                ||    |:             |||.| ||...|:...:  |.:|..|.|...:.|..:|  
Zfish   161 ----ND----WN-------------TENCTNYFGKDNVTWTN--YSRSPAEEFYTRNVLAVHESS 202

  Fly   196 -------ISWHLSGLFALVWATIAFIFYKFSEPAKFGKCIRYMVIGTVALLLVCFVRFLFLPGAH 253
                   |.|.|.....|::..:.|..:|..:.:  ||.:.........:||:..:|...||||.
Zfish   203 GLGNVGYIRWQLMLCLFLIFTIVYFSLWKGVKTS--GKVVWVTATLPYVVLLILMIRGATLPGAW 265

  Fly   254 LGLKNYMTPSIEEFVVGTSSTFIMALQAF---GAGWGSVITLSSFNGFKTNIMSYSWIISFGQIF 315
            .|:..|:.|..|: :..||.....|.|.|   |.|:|.::.|||:|.|..|....:.:.|.....
Zfish   266 KGVVFYLNPKWEK-LKETSVWVDAAAQIFFSLGPGFGVLLALSSYNPFTNNCYRDAIVTSLVNCL 329

  Fly   316 IYIMFGMVSFMLEHYFLGLPKPLFETQVIN---------HWVLFLSSASALSSLGWPNLWTFIYY 371
            ...:.|.|.|.:..|       :.|.:.:|         ..:||::...|::::.....:..|::
Zfish   330 TSFVSGFVIFTVLGY-------MAEQRNVNVEDVARDKGPSLLFITYPEAIANMVGSTFFAIIFF 387

  Fly   372 TMLLMAALIVITTQIFTILQSLFDEFEQLRAKKQEV-TLGLIGGLAVC---SLYFCTNHGVLYFA 432
            .|::...|......:..|:.::.||:..:.:.::|: .|||:   .||   ||...|..|.....
Zfish   388 VMMITLGLDSTFGGLEAIITAVMDEYPDVLSHRRELFVLGLV---VVCFLGSLSTLTKGGAYVVK 449

  Fly   433 ILSIDAIFSQTLLHLLL-LLVVLWVYGRDRFQKDIKFMLG-QPFASWKVFILRFVAPPTLVICLV 495
            :|....:.|..:..:.| ...|.|.||.:||..|||.||| .|...|||..:. ::|..|...::
Zfish   450 LLEEFGVGSSIIAIVFLEATAVSWFYGINRFSNDIKSMLGYTPGLFWKVCWVA-ISPAFLAYIII 513

  Fly   496 LEIKMCLEEHSYSSSVLHFMAI-----------ILVGLPILA-----IPAYGFYYIHQRPGSISE 544
                         ||:|:...:           |.||..|.|     ||.|..|.:...|||:.:
Zfish   514 -------------SSLLNPQTLTLFDYEFPDWSITVGYIIGASSFIWIPIYMVYKLVWTPGSLKQ 565

  Fly   545  544
            Zfish   566  565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13793NP_609136.2 SLC5-6-like_sbd 19..498 CDD:271356 132/513 (26%)
slc6a4bNP_001170930.1 SLC6sbd_SERT 38..574 CDD:271399 150/584 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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