DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG13793 and Slc6a20a

DIOPT Version :10

Sequence 1:NP_609136.2 Gene:CG13793 / 34047 FlyBaseID:FBgn0031935 Length:583 Species:Drosophila melanogaster
Sequence 2:NP_579830.2 Gene:Slc6a20a / 113918 RGDID:621651 Length:616 Species:Rattus norvegicus


Alignment Length:564 Identity:137/564 - (24%)
Similarity:229/564 - (40%) Gaps:125/564 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 RGNWEKPTDYIFACFGLALKLDIFVASFWFF------FNTGIFGMVPYLMYMVIYLVPIMVIHSY 70
            |..|..|..::|||...|:.|    .:.|.|      :..|.| :||||:.:::..:|::.:...
  Rat    29 RPQWGNPLQFVFACISYAVGL----GNVWRFPYLCQMYGGGSF-LVPYLIMLIVEGMPLLYLELA 88

  Fly    71 MGQFSSSGFISAFR-LSPLFKGMGYVSLFLTITLLIYYTIFAAVPLLFVLNSFRPTLPWSCEGFK 134
            :||....|.|.|:| :||...|:|..|:.::..|.:||.:..|....::.:||:..||       
  Rat    89 VGQRMRQGSIGAWRTISPYLSGVGVASVVVSFFLSMYYNVINAWGFWYLFHSFQDPLP------- 146

  Fly   135 SWQNDTIAKWSIC----NATIAEEVAKETENDTYF-YITNIHV-PSVLYFKSHFESFQNDSELND 193
                     ||:|    |.|..:|..::..:..|| |...::: ||:.         :|..    
  Rat   147 ---------WSVCPLNSNRTGYDEECEKASSTQYFWYRKTLNISPSIQ---------ENGG---- 189

  Fly   194 YEISWHLSGLFALVWATIAFIFYKFSEPAKFGKCIRYMVIGTVALLLVCFVRFLFLPGAHLGLKN 258
              :.|..:....|.|..:.....:.:|..  ||.:.:..:....:|::..||.|.|.||..||..
  Rat   190 --VQWEPALCLTLAWLMVYLCILRGTEST--GKVVYFTALMPYCVLIIYLVRGLTLHGATNGLMY 250

  Fly   259 YMTPSIEEFVVGTSSTFIMALQAF---GAGWGSVITLSSFNGFKTNIMSYSWIIS--------FG 312
            ..||.:|: :....:....|.|.|   |.|:||:|..:|:|....:...::.|:|        |.
  Rat   251 MFTPKMEQ-LANPKAWINAATQIFFSLGLGFGSLIAFASYNEPSNDCQKHAVIVSVINSSTSIFA 314

  Fly   313 QIFIYIMFGMV------------------SFMLEHYFL--------------------------- 332
            .|..:.::|..                  ||.||..||                           
  Rat   315 SIVTFSIYGFKATFNYENCLNKVILLLTNSFDLEDGFLTASNLEEVKDYLASTYPNKYSEVFPHI 379

  Fly   333 ---GLPKPLFETQVINHWVLFLSSASALSSLGWPNLWTFIYYTMLLMAALIVITTQIFTILQSLF 394
               .|...| .|.|....:.|:....|:.::....||:.:|:.||||..:..:......||..|.
  Rat   380 RNCSLESEL-NTAVQGTGLAFIVYTEAIKNMEVSQLWSVLYFFMLLMLGMGSMLGNTAAILTPLT 443

  Fly   395 DEFEQLRAKKQEVTLGLIGGLAVCS--LYFCTNHGVLYFAILSIDAIFSQTLLHLLLLLV----V 453
            |.........:|...||: .|..|:  :.|....|..:|.|.:   .::.||..||::||    |
  Rat   444 DSKVISSYLPKEAISGLV-CLINCAVGMVFTMEAGNYWFDIFN---DYAATLSLLLIVLVETIAV 504

  Fly   454 LWVYGRDRFQKDIKFMLGQPFA-SWKVFILRFVAPPTLVICLVL 496
            .:|||..||:.|::.|.|:|.. .||. :..||: |.|:|.|.:
  Rat   505 CYVYGLRRFESDLRAMTGRPLNWYWKA-MWAFVS-PLLIIGLFI 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13793NP_609136.2 SLC5-6-like_sbd 19..498 CDD:271356 134/557 (24%)
Slc6a20aNP_579830.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..26
SLC5-6-like_sbd 26..601 CDD:444915 137/564 (24%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.