DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ntl and Slc6a1

DIOPT Version :9

Sequence 1:NP_609135.1 Gene:Ntl / 34046 FlyBaseID:FBgn0267326 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_077347.1 Gene:Slc6a1 / 79212 RGDID:620533 Length:599 Species:Rattus norvegicus


Alignment Length:582 Identity:221/582 - (37%)
Similarity:362/582 - (62%) Gaps:27/582 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PTTNATRKDKRIERDENRGQWKSKSEFILSLLGYAIGIGNVWRFPYLCYRSGGAAFLIPYLLMVI 71
            |.|...:..|:.....:|..||.:.:|::|.:|||||:||||||||||.::||.||||||.|.:|
  Rat    27 PKTLVVKVQKKAGDLPDRDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLI 91

  Fly    72 LAGIPLFYMEILIGQFSSTGCTGMFRMTPLLKGTGIAQVVVNAYCVCYYSVIISYPIRMIFYCFF 136
            .||:|||.:|..:||::|.|..|::::.|:.||.|:|..|::.:...||.||||:.|..::..|.
  Rat    92 FAGVPLFLLECSLGQYTSIGGLGVWKLAPMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFT 156

  Fly   137 KKVPWEDCSNSWNTDDCVTASDMGKQNSSDVFKTSA-DEFFHLEVLRISTDISDLGGMVWEQLTA 200
            ..:||:.|.|.||||.|.  |:....|::::  ||| .||:...:.:::..:...|.:.|.....
  Rat   157 TTLPWKQCDNPWNTDRCF--SNYSLVNTTNM--TSAVVEFWERNMHQMTDGLDKPGQIRWPLAIT 217

  Fly   201 LIITWIIIYFCLMRGIKSVGKVVYFTVPFPYLLLFILLIRGATLPGAWKGIKFYLYPEWHRLLDL 265
            |.|.|:::|||:.:|:...||||||:..:||::|.||..||.|||||.:||.||:.|.:.:|.|.
  Rat   218 LAIAWVLVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDS 282

  Fly   266 KVWADAAVQMFFGIGPGWGGIVNMASFSSFRNNAKCDSVLIVSINVFTSLLAGFVVFSVLGFLSE 330
            :||.|||.|:||..|.|.|.::.:.|::||.||...||:::..||..||:.||||:||::||::.
  Rat   283 EVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAH 347

  Fly   331 KSGIPVESVATGGAGLAFVTYPEAIALLPVPQLWALMFFFMLFLLGIDSVFVQLEAIMSSILDEW 395
            .:...:..||..|.||||:.||||:..||:..|||::||.||.:|||||.|..:|..:::::||:
  Rat   348 VTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEY 412

  Fly   396 YWVRSHKCKLTLIS-CLI--FLGLSSIMCTNGGMFILQLFDWYS-SAIAVIVICLVEIIMVAWIY 456
            ..:..::.:|.:.: |::  .:|||:|  |.||:::.:|||:|| |.::::.:...|.:.::|.|
  Rat   413 PRLLRNRRELFIAAVCIVSYLIGLSNI--TQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFY 475

  Fly   457 GIKNFMLDVEFMLGKRPTLYWRIVWQVVTPVIIIFILITSIVFIRTITYNNIPYPQWAIIIGWAS 521
            |:..|..:::.|:|.||.::|::.|...||:|:..:.:.|.|.:..:|..:..:|:|...:||..
  Rat   476 GVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFLFSAVQMTPLTMGSYVFPKWGQGVGWLM 540

  Fly   522 CFTSVMWIPLYIFYIMIRKRATLCDSLKKRLKPL----------DWTPADPQ--DRAEYEAF 571
            ..:|::.||.|:.|:.:    ||..|||:||:.:          :..|..||  ..|..||:
  Rat   541 ALSSMVLIPGYMAYMFL----TLKGSLKQRLQVMIQPSEDIVRPENGPEQPQAGSSASKEAY 598

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtlNP_609135.1 SLC5-6-like_sbd 24..554 CDD:294310 212/534 (40%)
Slc6a1NP_077347.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23
SLC6sbd_GAT1 2..599 CDD:212075 221/582 (38%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 577..599 6/22 (27%)
PDZ-binding 597..599 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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