DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ntl and snf-11

DIOPT Version :9

Sequence 1:NP_609135.1 Gene:Ntl / 34046 FlyBaseID:FBgn0267326 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_505873.2 Gene:snf-11 / 191770 WormBaseID:WBGene00004910 Length:610 Species:Caenorhabditis elegans


Alignment Length:579 Identity:209/579 - (36%)
Similarity:328/579 - (56%) Gaps:50/579 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 RGQWKSKSEFILSLLGYAIGIGNVWRFPYLCYRSGGAAFLIPYLLMVILAGIPLFYMEILIGQFS 88
            |.||.|.::||:|.:|||||:|||||||||||::||.||||||.:.::..|.|||.:|...||..
 Worm    10 REQWSSWADFIMSCIGYAIGLGNVWRFPYLCYQNGGGAFLIPYCISLVFCGAPLFILETSWGQLM 74

  Fly    89 STGCTGMFRMTPLLKGTGIAQVVVNAYCVCYYSVIISYPIRMIFYCF-FKKVPWEDCSNSWNTDD 152
            |.|..|||::.|:.||.|||..|:..:...||.|::|:....::..| ...|||::|.::|||.:
 Worm    75 SVGGLGMFKICPIFKGVGIAAAVMAFWLNIYYIVVLSWAATYLYNSFTMSDVPWKNCDHAWNTPN 139

  Fly   153 C----------------------VTASD----------MGKQ------NSSDVFKTS-ADEFFHL 178
            |                      |...|          :|::      :::|:...| ..||::.
 Worm   140 CRSEYVKIPCDSNRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVCSAADLSVVSPVKEFWNH 204

  Fly   179 EVLRISTDISDLGGMVWEQLTALIITWIIIYFCLMRGIKSVGKVVYFTVPFPYLLLFILLIRGAT 243
            .||.||:.:.:.||:.|:....|::.|||.|.|:.:|:|..|||||.|..|||::||.|||||.|
 Worm   205 RVLGISSGLENPGGIRWDLALFLLLVWIICYLCIFKGVKWTGKVVYITASFPYMMLFCLLIRGLT 269

  Fly   244 LPGAWKGIKFYLYPEWHRLLDLKVWADAAVQMFFGIGPGWGGIVNMASFSSFRNNAKCDSVLIVS 308
            |.||..|::|||.|::.:||:.|||.||..|:||..|.|.|.:|.:.|::.|.||....::.:..
 Worm   270 LEGAGVGLEFYLKPDFSKLLESKVWVDAVTQVFFSYGLGLGALVALGSYNKFNNNVYKQALTVCF 334

  Fly   309 INVFTSLLAGFVVFSVLGFLSEKSGIPVESVATGGAGLAFVTYPEAIALLPVPQLWALMFFFMLF 373
            :|..||:.||||:||.:||::.:....|..||..|.||.|:.||..|..||..|.|:.:||.|:.
 Worm   335 VNSGTSVFAGFVIFSFIGFMATQQEKSVAEVAQAGPGLLFLAYPSGILQLPYTQFWSCLFFLMVL 399

  Fly   374 LLGIDSVFVQLEAIMSSILDEWYWVRSHKCKLTL---ISCLI--FLGLSSIMCTNGGMFILQLFD 433
            .||:||.|..:|...::|:||:..:|..|....:   :.|:|  .:||:::  |.||.::.||||
 Worm   400 FLGVDSQFCTMEGFFTAIIDEFPQIRRKKYGREIFVGVICVISYLIGLTTV--TEGGFYVFQLFD 462

  Fly   434 WY-SSAIAVIVICLVEIIMVAWIYGIKNFMLDVEFMLGKRPTLYWRIVWQVVTPVIIIFILITSI 497
            :| :|..|::.:...|.|.::|..||..:...::.|:|..|:.:|:..|...||.:...:|:..:
 Worm   463 FYAASGWALLWLLFFECIAISWSLGIDRWYEHMKSMIGYYPSAWWKFCWVFATPSVCFGVLLFGL 527

  Fly   498 VFIRTITYN--NIPYPQWAIIIGWASCFTSVMWIPLYIFYIMIRKRATLCDSLKKRLKP 554
            :..:.:..:  |..||.|..|.||....:|::.||.|..:|..:...|:.:.:|...:|
 Worm   528 IKYQPLRIDAYNYDYPVWGHIFGWFLSLSSMLCIPGYAIWIWFKTPGTVQEKIKLLCRP 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtlNP_609135.1 SLC5-6-like_sbd 24..554 CDD:294310 208/577 (36%)
snf-11NP_505873.2 SLC6sbd-TauT-like 10..586 CDD:271387 208/577 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2610
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.770

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