DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ntl and snf-10

DIOPT Version :9

Sequence 1:NP_609135.1 Gene:Ntl / 34046 FlyBaseID:FBgn0267326 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_505682.2 Gene:snf-10 / 191769 WormBaseID:WBGene00004909 Length:673 Species:Caenorhabditis elegans


Alignment Length:647 Identity:163/647 - (25%)
Similarity:263/647 - (40%) Gaps:151/647 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 WKSKSEFILSLLGYAIGIGNVWRFPYLCYRSGGAAFLIPYLLMVILAGIPLFYMEILIGQFSSTG 91
            |.||.|.|.:.|.:....||:|.|||||...|| .|...:....:...:||.|:|..:||::|..
 Worm    80 WTSKWEAITATLSFVTCSGNIWFFPYLCGYYGG-WFPYQFTFCYVFIAVPLLYLETALGQYASAS 143

  Fly    92 CTGMF-RMTPLLKGTGIAQVVVNAYCVCYYSVIISYPIRMIFYC---FFKKVPWEDCSNSWNTDD 152
            ...:| ||.|.:.|.......:..:.....||...|.:.:..:.   .:...|||.|..|.:.|.
 Worm   144 PLSVFSRMAPAMAGLSAGMCFIMVFRTISLSVWAIYDLTIFTHASQSIWSTSPWESCQESQSGDY 208

  Fly   153 CVTASDMGK----QNSSDVFKTSADEFFHLEVL------RISTDISDLGGMV---------WE-- 196
            ||......|    |..||   ...||:..:.:.      |.|..:|.:.|::         ||  
 Worm   209 CVNYKLSSKCTWIQPGSD---KECDEYQEMLIATRGFQQRKSPFMSFVHGLMYKRSITMNDWEPP 270

  Fly   197 QLTALIIT---WIIIYFCLMRGIKSVGK--VVYFTVPFPYLLL---FILLIRGATLPGAWKGIKF 253
            .:|::|..   ||||....:.|.|.:|:  :|..|     |||   .:||..|.:|.........
 Worm   271 SVTSIICAVCLWIIIGIISIGGSKVLGRTGIVALT-----LLLVGTIMLLSYGMSLNDTTNVFTA 330

  Fly   254 YLY------PEWHRLLDLKVWADAAVQMFFGIGPGWGGIVNMASFSSFRNNAKCDSVLIVSINVF 312
            :.|      .:|   :.:..|||||......:..|.|||...||.::|.|....| ||::||..|
 Worm   331 FFYQSEGYEDKW---MWVWSWADAAAHALRALNVGCGGIQKFASLNNFHNKIHRD-VLLISIVSF 391

  Fly   313 -----TSLLAGFVVFSVLGFL-------SEK-----SGIPVESVATGGAGLAFVTYPEAIALLPV 360
                 |.||: |:..:.:|.|       ||:     :.:.:|||.:           |.:....:
 Worm   392 VFYICTGLLS-FMFMAEIGRLYYPDLEASERIQLYATPVMIESVIS-----------EILTNSSM 444

  Fly   361 PQLWALMFFFMLFLLGIDSVFVQLEAIMSSILD--------------EWYWVRSHKCKLT----- 406
            ..:|..:|:..|....|..:...:..|.|.|::              .|     ||..:.     
 Worm   445 GSIWVFLFWLTLAACSIQGISSYIWVISSMIVERLNGSRRKYGKALASW-----HKRAIILAIMS 504

  Fly   407 ---LISCLIFLGLSSIMCTNGGMFILQLFDWYSSAIAVIVICLVEIIMVAWIYGIKNFMLDVEFM 468
               |||.|.|||       |||:.::...:.::| ...|.|..||:|.|:::||.|.|.:::..|
 Worm   505 VTGLISSLPFLG-------NGGINLMSSIETFAS-YGTIFIAFVEVITVSYVYGFKRFSVNIRAM 561

  Fly   469 LGKR--PTLYWRIVWQVVTPVIIIFILITSIVFIRTITYNNIPYPQWAII---IGWASCFTSVMW 528
            :|..  |.::|.:.|.|::|:::|   :|....:.|..... .:.:.:|:   ||::......::
 Worm   562 IGGHGPPNVFWWLNWLVISPILLI---VTFGCIVATFGQKK-AFNENSIVSDPIGYSLLVMPCIF 622

  Fly   529 IPLYI-------------FYIMIRKRATLCDSLKKRLKPLDWTPADPQDRAEYEAFRRQRRM 577
            :.||.             |.:|||...             ||.|.:|:||.....|.||.|:
 Worm   623 VILYFLRDEYDRRKNMEPFVVMIRATG-------------DWGPMNPEDRRNAVKFERQLRV 671

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtlNP_609135.1 SLC5-6-like_sbd 24..554 CDD:294310 153/622 (25%)
snf-10NP_505682.2 SNF 78..628 CDD:264495 149/589 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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