DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ntl and snf-6

DIOPT Version :9

Sequence 1:NP_609135.1 Gene:Ntl / 34046 FlyBaseID:FBgn0267326 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_001367976.1 Gene:snf-6 / 191768 WormBaseID:WBGene00004905 Length:714 Species:Caenorhabditis elegans


Alignment Length:580 Identity:184/580 - (31%)
Similarity:324/580 - (55%) Gaps:34/580 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 DEN--RGQWKSKSEFILSLLGYAIGIGNVWRFPYLCYRSGGAAFLIPYLLMVILAGIPLFYMEIL 83
            |||  ||.|.:||:::|:::|:..|:|:.|:||:|.::.||||||:|||.|:.||.:|:|:||::
 Worm    59 DENRIRGNWSNKSDYLLAVIGFTAGVGSFWKFPFLVFQHGGAAFLVPYLCMLCLASLPMFFMEMV 123

  Fly    84 IGQFSSTGCTGMFRMTPLLKGTGIAQVVVNAYCVCYYSVIISYPIRMIFYCFFKKVPWEDCSNSW 148
            :|||||:....::::.||.||.|.|||.::.:...::::|.::.:..:...|...:||.:|:|||
 Worm   124 LGQFSSSAAISVWKVVPLFKGIGFAQVTISGFFAVFFNIISAWTLFYLINSFSFSIPWSNCANSW 188

  Fly   149 NTDDC----------------VTASDMGKQNSS---------DVFKTSADEFFHLEVLRISTDIS 188
            :.::|                |..|.:.:..||         |:....:.::||.:||.:|..:.
 Worm   189 SGENCTLGTRIQCKEMNGTLLVNGSCIVEHASSNETTVIPLHDLGSIPSLKYFHNDVLMLSKGVD 253

  Fly   189 DLGGMVWEQLTALIITWIIIYFCLMRGIKSVGKVVYFTVPFPYLLLFILLIRGATLPGAWKGIKF 253
            |.|.:.|.....::..||.::.||.:|:||.|||||..|..|:::|.:||.|..||.|:...:.:
 Worm   254 DFGTLNWYLGLCVLACWIAVFLCLFQGVKSSGKVVYVAVIVPFIILTVLLTRLLTLDGSLAAVFY 318

  Fly   254 YLYPEWHRLLDLKVWADAAVQMFFGIGPGWGGIVNMASFSSFRNNAKCDSVLIVSINVFTSLLAG 318
            :|.|:|..|:||.||.:||||.|:.:....||:..:||:|.|.||...|..|::.::|..||:..
 Worm   319 FLTPKWEILMDLHVWGEAAVQAFYSVSCCSGGLFTIASYSRFHNNIYKDIWLVLIVDVIVSLVGC 383

  Fly   319 FVVFSVLGFLSEKSGIPVESV-ATGGAGLAFVTYPEAIALLPVPQLWALMFFFMLFLLGIDSVFV 382
            .:.||.:||...:..|.::.. ...|..|.||...||:|.:.|..|:|.:||.|:.|:...:...
 Worm   384 LLTFSAIGFTCYEFAISLDKFHIRDGFHLVFVFLAEALAGVSVAPLYAGLFFIMILLVVHATQMF 448

  Fly   383 QLEAIMSSILDEW--YWVRSHKCKLTLISCLIFLGLSSIMCTNGGMFILQLFDWYSSAIAVIVIC 445
            .:|.|:|||.||:  ...|:.:..||.: |.:|:.||...|.:.|:|.::|...:.....::||.
 Worm   449 VVETIVSSICDEYPERLRRNRRHVLTTV-CALFILLSIPFCLSSGLFWMELLTQFVLTWPLVVIA 512

  Fly   446 LVEIIMVAWIYGIKNFMLDVEFMLGKRPTLY--WRIVWQVVTPVIIIFILITSIVFIRTITYNNI 508
            .:|.:.:.|:||:.|.:.:.::::|..|..|  |:|:::.:.|::.:.||....:...:|.|.:.
 Worm   513 FLECMAINWVYGVDNMLDNAKWIVGYWPPCYIFWKILFKFICPMVYLAILCFLWLDWNSIQYESY 577

  Fly   509 PYPQWAIIIGWASCFTSVMWIPLYIFYIMIRKRATLCDSLKKRLKPLD-WTPADPQDRAE 567
            .:|.|:|:..|......::.||:...:.....:.|:.....:.|.|.| |.||....|||
 Worm   578 QFPYWSILTAWCIASFPLILIPIVGIWQFCIAKGTITQKWWRVLYPDDAWGPAMAIHRAE 637

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtlNP_609135.1 SLC5-6-like_sbd 24..554 CDD:294310 173/559 (31%)
snf-6NP_001367976.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2610
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.770

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