DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ntl and snf-12

DIOPT Version :9

Sequence 1:NP_609135.1 Gene:Ntl / 34046 FlyBaseID:FBgn0267326 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_509527.1 Gene:snf-12 / 181143 WormBaseID:WBGene00004911 Length:1022 Species:Caenorhabditis elegans


Alignment Length:614 Identity:183/614 - (29%)
Similarity:317/614 - (51%) Gaps:69/614 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 ERDENRGQWKSKSEFILSLLGYAIGIGNVWRFPYLCYRSGGAAFLIPYLLMVILAGIPLFYMEIL 83
            ::::.|..|:::.:|.||.||:.:|:|:..|||...|:.||..|.||||..:|..|:||.::.:.
 Worm   152 KQNDRRELWRTQKDFFLSCLGFMVGVGHTMRFPAKVYQHGGGVFFIPYLFSLIFFGLPLVFLHLS 216

  Fly    84 IGQFSSTGCTGMF-RMTPLLKGTGIAQVVVNAYCVCYYSVIISYPIRMIFYCFFK---------K 138
            :||::.......| |:.|:..|.|.|.||:......||::|:::.|    :.||:         :
 Worm   217 LGQYTGQAANTAFQRLMPIGSGVGWALVVIAIPVAVYYNIIVAWAI----HYFFQSAKGLLLGDE 277

  Fly   139 VPWEDCSNSWNTDD-CVTASDMGKQNSSDVFKTSADEFFHLEVLRIST--DISDLGGMVWEQLTA 200
            :|||.|.:.|..|: |....::....:|....|:.:.|||.|||.:||  |.: ||.:....:.:
 Worm   278 LPWETCRDEWQLDNRCCNLHNLHSCFNSTNSITAPEAFFHSEVLSLSTFGDFA-LGPLQSHLVLS 341

  Fly   201 LIITWIIIYFCLMRGIKSVGKVVYFTVPFPYLLLFILLIRGATLPGAWKGIKFYLYPEWHRLLDL 265
            |...|::::|.:.:|:.|:.:.:..|...|||||.|||:||.:||||.||:.|....:..:|...
 Worm   342 LAAAWLLVFFGVFKGLGSIAQTMNVTATVPYLLLSILLLRGISLPGANKGLTFLFTVDSTKLWKW 406

  Fly   266 KVWADAAVQMFFGIGPGWGGIVNMASFSSFRNNAKCDSVLIVSINVFTSLLAGFVVFSVLGFLSE 330
            ::|..||.|:|:.:|...|.:::||:||.:|||...||||:|.::..||.|:|.|:||.:||::.
 Worm   407 QIWKSAAEQVFYELGIDAGPLISMAAFSRYRNNIYRDSVLLVIMDALTSCLSGMVIFSFVGFIAS 471

  Fly   331 KSGIPVESVAT-GGAGLAFVTYPEAIALLPVPQLWALMFFFMLFLLGIDSVFVQLEAIMSSILDE 394
            :|...|..|.. ....|:|..||...:.:....|||.:||.||.|..||:.|..||.|.|:.:: 
 Worm   472 ESNSNVNDVLKHDPLYLSFTVYPGVTSFMYWGGLWATLFFGMLVLAAIDAEFAWLEMIASAFMN- 535

  Fly   395 WYWVRSHKC---KLTLISCL--IFLGLSSIMCTNGGMFILQLFD-----WYSSAIAVIVICLVEI 449
             ::...:|.   :|....||  .||||.  :|..||:|:....:     |.|.::|     |:.:
 Worm   536 -HFSMKNKAVENRLLAFLCLAGFFLGLP--LCAQGGIFVFHAIENLNANWNSFSLA-----LLSV 592

  Fly   450 IMVAWIYGIKNFMLDVEFML-------GKRPTLYWRIVW-------------QVVTPVIIIFILI 494
            .:|.::|||.|::.|:..||       .|...|..::::             ..:.|||:..:|:
 Worm   593 AIVCYVYGIDNYLTDISAMLRVPRIQISKATRLKEKLIYFFGPGGIYIKFSLCFICPVILTVLLV 657

  Fly   495 TSIVFIRTITYNNIPYPQWAIIIGWASCFTSVMWIPLYIFYIMIRKRATLCDSLKKRLKPLDWTP 559
            .|::..:.|::...|.|....|:.|......::.:|| :.::.||:.......||......:|..
 Worm   658 ASVLGYQRISFAGRPIPIDYEIVAWIVMIGPLLVVPL-VAFMQIRQIRNEGKLLKSLFDTSEWRE 721

  Fly   560 A-----DPQD-----RAEYEAFRRQRRMP 578
            :     :|:|     ..::|:...:||.|
 Worm   722 SQDDSLEPKDLYMRQSGKFESPPNRRRTP 750

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtlNP_609135.1 SLC5-6-like_sbd 24..554 CDD:294310 176/573 (31%)
snf-12NP_509527.1 SLC6sbd 158..660 CDD:271359 163/515 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.780

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