DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ntl and snf-3

DIOPT Version :9

Sequence 1:NP_609135.1 Gene:Ntl / 34046 FlyBaseID:FBgn0267326 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_493910.2 Gene:snf-3 / 173493 WormBaseID:WBGene00004902 Length:600 Species:Caenorhabditis elegans


Alignment Length:584 Identity:213/584 - (36%)
Similarity:328/584 - (56%) Gaps:41/584 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PTTNATRKDKRIERDE-----NRGQWKSKSEFILSLLGYAIGIGNVWRFPYLCYRSGGAAFLIPY 66
            ||..|  |.|.:|:.:     :||||..|.:|::|::.||:|:|||||||||||::||.:||:.|
 Worm    10 PTDEA--KAKELEQSQHSEEPDRGQWTGKFDFLMSMVAYAVGLGNVWRFPYLCYKNGGGSFLVVY 72

  Fly    67 LLMVILAGIPLFYMEILIGQFSSTGCTGMFRMTPLLKGTGIAQVVVNAYCVCYYSVIIS----YP 127
            ::...||.:|:|.||:.:||:...|...|:.|.||.:|.||..||:...|:.|:.||::    |.
 Worm    73 MIFFCLAAVPIFLMEVTVGQYLQKGAMEMWLMCPLFRGVGIGNVVIAFMCIAYFCVIVAWAMFYM 137

  Fly   128 IRMIFYCFFKKVPWEDCSNSWNTDDCVTASDMGKQNSSDVFK-------------TSADEFFHLE 179
            |..|.:.|    |||.|:|.||...|||    ||:|.:::.:             ||.::|:...
 Worm   138 ISSIAWVF----PWETCNNYWNDATCVT----GKENFTELARIKALVASAGGHTQTSVEQFWEKR 194

  Fly   180 VLRISTDISDLGGMVWEQLTALIITWIIIYFCLMRGIKSVGKVVYFTVPFPYLLLFILLIRGATL 244
            ||..:.|||:.||:.||....:...|:|:||.|.:||....|.|||...|||:|:|||||||.||
 Worm   195 VLHDTGDISEFGGIQWELFFIMAAAWLIVYFALWKGITQARKFVYFCALFPYVLIFILLIRGLTL 259

  Fly   245 PGAWKGIKFYLYPEWHRLLDLKVWADAAVQMFFGIGPGWGGIVNMASFSSFRNNAKCDSVLIVSI 309
            .||..||.|||.|...||||..||.||..|:|:..|.|:|.::.:.|.:.|.:|...|::.:..|
 Worm   260 EGAGTGIYFYLKPNATRLLDTAVWKDAGTQVFYSYGVGFGALIALGSHNKFNHNCFKDAITMCFI 324

  Fly   310 NVFTSLLAGFVVFSVLGFLSEKSGIPVESVATGGAGLAFVTYPEAIALLPVPQLWALMFFFMLFL 374
            |..||:.|||.|||:||::|..:...:..:...|.||||:.|||..:.||:.|::|::||.|:.:
 Worm   325 NGCTSITAGFAVFSILGYMSHVAQKDISEIVKPGVGLAFLAYPEVASNLPMKQVFAVLFFLMITI 389

  Fly   375 LGIDSVFVQLEAIMSSILDEWYWVRSHKCKLTLISCLIFLGLSSIMCTNGGMFILQLFDWY-SSA 438
            ||:||....:|.:.:::.|.:..:|.:|.:...|.||.|..:...|.|:.|...|.|||.| :|.
 Worm   390 LGLDSQVCMMEGLFTALEDAFPILRKYKKQSLGIFCLFFFCIGIPMVTHSGSHWLTLFDAYGASG 454

  Fly   439 IAVIVICLVEIIMVAWIYGIKNFMLDVEFMLGKRPTLYWRIVWQVVTPVIIIFILITSIVFIRTI 503
            .|::.:...|::.:|:.:|..|....:..|:|.........||:...|...:.:.:..:|:...:
 Worm   455 YALLFVVFFEVVGLAYGFGAHNIRKALHEMIGVTLPKGIEYVWKFCAPATSLVLFVFCVVYYHPV 519

  Fly   504 TY-NNIPYPQWAIIIGW--ASCFTSVMWIPLYIFYIMI--RKRATLCDSLKKRLKPLDWTPADP 562
            .| :...:|.||...||  :||  |::.||.|..|.:.  .|..||.:.::|.|. ||.:...|
 Worm   520 KYPDGKDFPFWANAFGWFLSSC--SMVVIPGYAIYYLFFTNKHLTLKERVRKGLN-LDGSFESP 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtlNP_609135.1 SLC5-6-like_sbd 24..554 CDD:294310 204/552 (37%)
snf-3NP_493910.2 SLC6sbd-TauT-like 30..571 CDD:271387 203/550 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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