DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ntl and snf-2

DIOPT Version :9

Sequence 1:NP_609135.1 Gene:Ntl / 34046 FlyBaseID:FBgn0267326 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_492396.2 Gene:snf-2 / 172701 WormBaseID:WBGene00004901 Length:746 Species:Caenorhabditis elegans


Alignment Length:601 Identity:179/601 - (29%)
Similarity:285/601 - (47%) Gaps:80/601 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 ATRKDKR-------IERDENRGQWKSKSEFILSLLGYAIGIGNVWRFPYLCYRSGGAAFLIPYLL 68
            |.||..|       .:|...||     .|.:||.||.|||:||:||||.:.|::||.:|||.|::
 Worm    93 AARKAYRDAIQVENTDRQAFRG-----IESLLSSLGQAIGLGNIWRFPTVAYQNGGTSFLIVYII 152

  Fly    69 MVILAGIPLFYMEILIGQFSSTGCTGMF-RMTPLLKGTGIAQVVVNAYCVCYYSVIISYPIRMIF 132
            ...:..:|..:||..:||:::.....:| |:.|.|:|.|....:|.|....||.::||:.:..|.
 Worm   153 CAFVFAVPAIHMEFALGQYAAKSPPAVFRRIMPALEGVGWMTCIVGAVIGVYYMILISWIVLYII 217

  Fly   133 YCFFKKVPWEDCSNSWNTDDCVTASDMGK----------QNSSDVFKTS---------------- 171
            ..|:.. ....|.|.||.::|...|:..:          .|:|....|:                
 Worm   218 NIFYVN-NMGRCDNPWNQNNCYDGSEQSRCNKGLYSNMTANASSFLNTTMAPLMSSGSKRILYIN 281

  Fly   172 --------------ADEFFHLEVLRISTDISDLGGMVWEQLTALIITWIIIYFCLMRGIKSVGKV 222
                          .::||...|:|.|...:|...:....|.|:.:.|:|....|:||:|::||:
 Worm   282 GKCQDATNMSVEVGTEQFFSKSVIRPSAGFTDFNSINLPILGAVALCWVIAAVVLIRGMKAIGKL 346

  Fly   223 VYFTVPFPYLLLFILLIRGATLPGAWKGIKFYLY--PEWHRLLDLKVWADAAVQMFFGIGPGWGG 285
            .|.||..||.::..|||.|.:||||..|: ::|:  .:::.|...:.|..|..|:.|.:..|.||
 Worm   347 SYVTVILPYFIIVSLLICGVSLPGAKDGL-YHLFGQTDFNYLYKRETWTAALQQICFSLSIGQGG 410

  Fly   286 IVNMASFSSFRNNAKCDSVLIVSINVFTSLLAGFVVFSVLGFLSEKSGI------PVESVATGGA 344
            ::|:||::....|...|..:||.::...|:|.|..|||.||||:.:.||      ....:...|.
 Worm   411 LMNIASYNKKTYNWYRDVYIIVFLDTLMSILGGITVFSTLGFLAYERGINSTDIDAFNHIVKEGH 475

  Fly   345 GLAFVTYPEAIALLPVPQLWALMFFFMLFLLGIDSVFVQLEAIMSSILDEWYWVRSHKCKLTLIS 409
            .|||:.|.||||.:|||.||..:||.|||||||.:..|.:|.:.|.:.|.:.::|..:....|..
 Worm   476 ALAFIVYTEAIAEMPVPYLWYALFFIMLFLLGISTEVVIVEIVCSCLADRFRYLRERRWLTVLSV 540

  Fly   410 CLIFLGLSSIMCTNGGMFILQLFDWYSSAIAVIVICLVEIIMVAWIYGIKNFMLDVEFMLGK--- 471
            ..:|..|..:|.|:.|.:...:||.||:.|:......:..:.|.|.||..:|..|:..|.|:   
 Worm   541 SAVFFLLGLVMTTDAGFYWFDMFDEYSTGISATFGTAIMCMTVFWCYGTNHFREDIAVMWGEPES 605

  Fly   472 ------RPTLY-WRIVWQVVTPVIIIFILITSIVFIRTITY----NNIPYPQWAIIIGWASCFTS 525
                  .|..| |.::|:.||||..:.::   .::|....|    :...||.....:||......
 Worm   606 WLATCLGPAAYFWTLIWKFVTPVCSLLMM---GLWIWEKKYPHKGDGKIYPPVFDALGWFIAVVP 667

  Fly   526 VMWIPLYIFYIMIRKR 541
            .:.||.:....:|..|
 Worm   668 FLVIPGFAIAAVINTR 683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtlNP_609135.1 SLC5-6-like_sbd 24..554 CDD:294310 174/581 (30%)
snf-2NP_492396.2 SLC6sbd 113..638 CDD:271359 164/534 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.920

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