DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ntl and snf-1

DIOPT Version :9

Sequence 1:NP_609135.1 Gene:Ntl / 34046 FlyBaseID:FBgn0267326 Length:590 Species:Drosophila melanogaster
Sequence 2:NP_491491.2 Gene:snf-1 / 172119 WormBaseID:WBGene00004900 Length:617 Species:Caenorhabditis elegans


Alignment Length:584 Identity:143/584 - (24%)
Similarity:243/584 - (41%) Gaps:80/584 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 DENRGQWKSKSEFILSLLGYAIGIGNVWRFPYLCYRSGGAAFLIPYLLMVILAGIPLFYMEILIG 85
            :|.|..|.||.|||:|.:.|...:.|....|.|...:||.||...|.::|.:..:|...||:.||
 Worm    18 EEWRDLWPSKIEFIVSAMAYLFAMTNFLNLPKLILENGGVAFAAAYAIVVGVLCMPTMVMEMSIG 82

  Fly    86 QFSSTG-CTGMFRMTPLLKGTGIAQVVVNAYCVCYYSVIISYPIRMIFYCFF------KKVPWED 143
            |.:... ....:.:.|:.:|.|::|::.....:...:..:|.....::|.|:      ..:||.:
 Worm    83 QVTGRAPVLAFYHLFPVFRGIGVSQILFTMVVLACMTKFLSTLCLFLYYYFWTFHAGRSGLPWLN 147

  Fly   144 CS--NSWNTDDCVTASDMGK----QNSSDVFKTSADEFFHLEVL-RISTDISDLGGMVWEQLTAL 201
            |.  ..:.:..|..|..:..    .|..:..:..:.....|..| |.|..|:|.....:..|.|.
 Worm   148 CKAFPEFVSQPCREAGSITNITQINNRLNTIQAESSMMQFLTTLERPSESIADFKDFQYPILIAQ 212

  Fly   202 IITWIIIYFCLMRGIKSVGKVVYFTVPFPYLLLFILLIRGATLPGAWKGIKFY-LYPEWHRLLDL 265
            ...||.|:..:..|::.|||.|.|.:...:..|.:..:|.|||.|..:.::.| ...:|.:|.|.
 Worm   213 GAIWIAIFVAICFGVRFVGKTVAFVLMLAFSSLLVFFLRSATLGGVTEILEIYWKATDWEKLADY 277

  Fly   266 KVWADAAVQMFFGIGPGWGGIVNMASFSSFRNNAKCDSVLIVSINVFTSLLAGFVVFSVLGFLSE 330
            :||..|..|...|.|.|:|..:.|:|:....||..|||:.:...::..|.:....:..::|:||.
 Worm   278 QVWRLAIEQAILGTGIGYGAFITMSSYMKRSNNLVCDSIFLSVWHLIISFVQTMSIICIVGYLSM 342

  Fly   331 KSGI-PVESVATGGAG----LAFVTYPEAIALLPVPQLWALMFFFMLFLLGIDSVFVQLEAIMSS 390
            |.|| |.|.:.||...    ||:|:|        :|:||:    .:|..:.|.::|..:..:..|
 Worm   343 KLGIHPTELLETGEDQMWYMLAYVSY--------LPKLWS----GVLLTICICTMFSVITILALS 395

  Fly   391 IL--------DEWYWVRSHKCK---LTLISCLIFLGLSSIMCTNGGMFILQLFDWYSSAIAVIVI 444
            :|        :.|    |..|:   |.|..||...||:....||.|....:|.........:..|
 Worm   396 VLSTFEDAFGENW----SKCCRRFFLALFVCLFCFGLTVYFATNAGRHAYELATRSIKYCTIYFI 456

  Fly   445 CLVEIIMVAWIYGIKNFMLDVEFMLGKRPT-------LYWRIVWQVVTPVIIIFILITSIVFIRT 502
            ...|:...||.|.......|:..|:..|..       ||:         ..::.||...:.|:..
 Worm   457 LTAELFATAWFYCAHKLGKDLHNMMRSRCCSCFGHFFLYF---------TYLLPILPAGVAFLNA 512

  Fly   503 ITYN----NIPYPQW--AIIIGWASCFTSVMWIPLYIFYIMI-------RKRATLCDSLKKRLK 553
            :.|.    :.|..:|  :..:|.|.....::.||||.|..::       :..|..|    ||::
 Worm   513 LDYKFSSFSAPIHEWKYSEYVGIAIAMVPLIPIPLYFFMTILCACCCKGKDHAKTC----KRIR 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NtlNP_609135.1 SLC5-6-like_sbd 24..554 CDD:294310 142/581 (24%)
snf-1NP_491491.2 SNF 21..554 CDD:264495 138/557 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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