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Protein Alignment CG18585 and Cpa1

DIOPT Version :9

Sequence 1:	NP_001260213.1	Gene:	CG18585 / 34041	FlyBaseID:	FBgn0031929	Length:	422	Species:	Drosophila melanogaster
Sequence 2:	NP_058694.2	Gene:	Cpa1 / 24269	RGDID:	2388	Length:	419	Species:	Rattus norvegicus

Alignment Length:	430	Identity:	148/430 - (34%)
Similarity:	244/430 - (56%)	Gaps:	23/430 - (5%)

- Green bases have known domain annotations that are detailed below.

  Fly     2 RLLWLLATLVALTSAGILKDSPKERYDNFRVYKLTIQNKIQLAAIEKIGELTK-KYNIWKEYDER 65
            |||.|...|.|:..        .|.:...:|.:::..::.|:..::::.:|.. :.:.|::....
  Rat     3 RLLILSLLLEAVCG--------NENFVGHQVLRISAADEAQVQKVKELEDLEHLQLDFWRDAARA 59

  Fly    66 SRQIDIMVSPGELNHFQELLKFNNISSELMIENVQERIDEEQVTPTADSA------TFGWTKYYE 124
            ...||:.|....:...:..|:::.||.|:|||:||..:|||:...:|..|      :|.:..|:.
  Rat    60 GIPIDVRVPFPSIQSVKAFLEYHGISYEIMIEDVQLLLDEEKQQMSAFQARALSTDSFNYATYHT 124

  Fly   125 LEEIEAWLDEILNAYPSVTEEFIVGKSYEGRTIRGIKISHKAGN-PGIFIESNIHAREWITSASA 188
            |:||..::|.::..:|.:..:..:|.::|||.|..:|.|....| |.|:|::.||:|||:|.||.
  Rat   125 LDEIYEFMDLLVAEHPQLVSKIQIGNTFEGRPIHVLKFSTGGTNRPAIWIDTGIHSREWVTQASG 189

  Fly   189 TWFINQLLT--SEDADVRSLADNYDWHIIPVFNVDGFEYSHKKDRMWRKTRQPHATNACIGADAN 251
            .||..::..  .:|....::.||.|..:..|.|.|||.|:||.:|||||||.....:.|:|.|.|
  Rat   190 VWFAKKITKDYGQDPTFTAVLDNMDIFLEIVTNPDGFAYTHKTNRMWRKTRSHTQGSLCVGVDPN 254

  Fly   252 RNFDSYWLQNNGASDNPCSETFAGDNPESEPEAKALVEYLTKIQDQISVYISFHSYGQYLLSPYG 316
            ||:|: .....|||.||||||:.|..|.||.|.|::|:::|. ...|..:||.|||.|.||.|||
  Rat   255 RNWDA-GFGMAGASSNPCSETYRGKFPNSEVEVKSIVDFVTS-HGNIKAFISIHSYSQLLLYPYG 317

  Fly   317 HTNEEFPENYNDILTIGKAFADAIEALPYGTVYQYGSTADVLYVATGTSVDWVFNELGKKIGYTI 381
            :|:|..|:. .::..:.|:...|:.:| :||.::|||..|.:|.|:|:::||.::: |.|..:|.
  Rat   318 YTSEPAPDQ-AELDQLAKSAVTALTSL-HGTKFKYGSIIDTIYQASGSTIDWTYSQ-GIKYSFTF 379

  Fly   382 EYRDKGRYGFILPPVQIIPNCEELMVGMLALIEKTKELGY 421
            |.||.|..||:||..||||..||..:.:|.:::.|.:..|
  Rat   380 ELRDTGLRGFLLPASQIIPTAEETWLALLTIMDHTVKHPY 419

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.