back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG18585 and Cpb2

DIOPT Version :9

Sequence 1:	NP_001260213.1	Gene:	CG18585 / 34041	FlyBaseID:	FBgn0031929	Length:	422	Species:	Drosophila melanogaster
Sequence 2:	NP_446069.1	Gene:	Cpb2 / 113936	RGDID:	71035	Length:	422	Species:	Rattus norvegicus

Alignment Length:	436	Identity:	153/436 - (35%)
Similarity:	239/436 - (54%)	Gaps:	49/436 - (11%)

- Green bases have known domain annotations that are detailed below.

  Fly     4 LWLLATLVALTSAGILKDSPKERYDNFRVYKLTIQNKIQLAA-------IEKIGELTKKYNI--W 59
            |:.|..|||:    ||          :..:.|..|:...|:|       ::.:..||..|.:  |
  Rat     3 LYGLGVLVAI----IL----------YEKHGLAFQSGHVLSALPRTSRQVQLLQNLTTTYEVVLW 53

  Fly    60 K----EYDERSRQIDIMVSPGELNHFQELLKFNNISSELMIENVQERIDE----EQVTPTADSAT 116
            :    |:.|:.:::...|:..::|..:..|..:.|...:::.||::.|.:    :.|:|.|.|:.
  Rat    54 QPVTAEFIEKKKEVHFFVNASDVNSVKAYLNASRIPFNVLMNNVEDLIQQQTSNDTVSPRASSSY 118

  Fly   117 FGWTKYYELEEIEAWLDEILNAYPSVTEEFIVGKSYEGRTIRGIKIS---HKAGNPGIFIESNIH 178
            :  .:|:.|.||.:|::.|...:|.:.::..:|.|||...:..:|:|   |:..| .|:|:..||
  Rat   119 Y--EQYHSLNEIYSWIEVITEQHPDMLQKIYIGSSYEKYPLYVLKVSGKEHRVKN-AIWIDCGIH 180

  Fly   179 AREWITSASATWFI---NQLLTSEDADVRSLADNYDWHIIPVFNVDGFEYSHKKDRMWRKTRQPH 240
            |||||:.|...|||   .|....|:...| |..:.|::|:||.||||::|:.||:|||||.|..|
  Rat   181 AREWISPAFCLWFIGYVTQFHGKENTYTR-LLRHVDFYIMPVMNVDGYDYTWKKNRMWRKNRSVH 244

  Fly   241 ATNACIGADANRNFDS-YWLQNNGASDNPCSETFAGDNPESEPEAKALVEYLTKIQDQISVYISF 304
            ..|.|:|.|.||||.| :|.: .|||...||||:.|..||||||.||:.::|.:..:.|..|||.
  Rat   245 MNNRCVGTDLNRNFASKHWCE-KGASSFSCSETYCGLYPESEPEVKAVADFLRRNINHIKAYISM 308

  Fly   305 HSYGQYLLSPYGHTNEEFPENYNDILTIGKAFADAIEALPYGTVYQYGSTADVLYVATGTSVDWV 369
            |||.|.:|.||.: |....:::.::..:......|||::...|.|.:||.::.||:|.|.|.||:
  Rat   309 HSYSQQILFPYSY-NRSKSKDHEELSLVASEAVRAIESINKNTRYTHGSGSESLYLAPGGSDDWI 372

  Fly   370 FNELGKKIGYTIEYRDKGRYGFILPPVQIIPNCEELMVGMLALIEK 415
            : :||.|..:|||.||.|||||:||...|.|.|.|    .||.:.|
  Rat   373 Y-DLGIKYSFTIELRDTGRYGFLLPERFIKPTCAE----ALAAVSK 413

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.