DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6739 and VLDLR

DIOPT Version :10

Sequence 1:NP_609130.1 Gene:CG6739 / 34037 FlyBaseID:FBgn0031926 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_003374.3 Gene:VLDLR / 7436 HGNCID:12698 Length:873 Species:Homo sapiens


Alignment Length:462 Identity:99/462 - (21%)
Similarity:132/462 - (28%) Gaps:217/462 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly   291 PLSASGRPTEAMALTTPS---TTNSGCQSTMLPMCQGVLDYDLTFNREGAAPRDAVSMAAYDSLI 352
            |..:....|...|...||   .||..| .|:|..|.|              ..|.|..:...:.:
Human    19 PRESGATGTGRKAKCEPSQFQCTNGRC-ITLLWKCDG--------------DEDCVDGSDEKNCV 68

  Fly   353 RANCSVRAAEFICGALEPECRPLHIGQLPPCRRICKAILEACSIPIYNSDVLGELFDCNLYPDAH 417
            :..|:  .::|:|          :.||..|.|                       :.|:..||  
Human    69 KKTCA--ESDFVC----------NNGQCVPSR-----------------------WKCDGDPD-- 96

  Fly   418 ESHKCEDPTRRRD------YCYGNEFQC--HDGSCIPQNWQCDKIKDCQGGEDEDEQC--LVCEP 472
                |||.:....      .|..:|..|  |...|||.:|:||...||..|||| |.|  :.|.|
Human    97 ----CEDGSDESPEQCHMRTCRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE-ENCGNITCSP 156

  Fly   473 DEFRCRSNEKCLVEKYRCDQNIDCMDGSDEQDCDEYGSGDLAPFDESELNAFPRVFTYASFLSPN 537
            |||.| |:.:|:...:.|:...||.|||||.||                                
Human   157 DEFTC-SSGRCISRNFVCNGQDDCSDGSDELDC-------------------------------- 188

  Fly   538 ETNDKVYTYITATTDEDAGTETKFQIHQVAAPAPPVNSSAEEGAGGPKGFVNFRDSKEIMMTSDS 602
                                            |||...:.|                        
Human   189 --------------------------------APPTCGAHE------------------------ 197

  Fly   603 ETKFKYSQRANRTSVKFSVSAPTTPAARTSSAIPSSALVQQRERTTSTTTTSTTTSTTTSSITST 667
                            |..|        |||.||.|.:..               .....|..|.
Human   198 ----------------FQCS--------TSSCIPISWVCD---------------DDADCSDQSD 223

  Fly   668 PSITSTTLIPINAATSEPNPYEVVTSLGGCPPQELRCVSGKCITVSQLCDKQIDCPDAADELMCV 732
            .|:......|:           :.|.   ||..|::|.||:||.....||...||.|.:||:.| 
Human   224 ESLEQCGRQPV-----------IHTK---CPASEIQCGSGECIHKKWRCDGDPDCKDGSDEVNC- 273

  Fly   733 YRERPSR 739
                |||
Human   274 ----PSR 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6739NP_609130.1 CRD_FZ 314..427 CDD:143549 20/112 (18%)
LDLa 432..464 CDD:238060 15/33 (45%)
LDLa 470..505 CDD:238060 16/34 (47%)
LDLa 697..731 CDD:238060 15/33 (45%)
VLDLRNP_003374.3 LDLa 33..67 CDD:238060 11/48 (23%)
LDLa 71..103 CDD:197566 13/72 (18%)
Ldl_recept_a 111..149 CDD:395011 17/38 (45%)
LDLa 154..188 CDD:238060 16/34 (47%)
Ldl_recept_a 192..224 CDD:395011 11/94 (12%)
Ldl_recept_a 237..273 CDD:395011 16/38 (42%)
Ldl_recept_a 276..312 CDD:395011 1/1 (100%)
Ldl_recept_a 320..350 CDD:395011
FXa_inhibition 360..394 CDD:464251
EGF_CA 396..426 CDD:214542
Ldl_recept_b 481..522 CDD:459654
LY 505..547 CDD:214531
Ldl_recept_b 568..608 CDD:459654
LY 592..634 CDD:214531
Ldl_recept_b 655..695 CDD:459654
FXa_inhibition 706..749 CDD:464251
Blue background indicates that the domain is not in the aligned region.

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