DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6739 and ldlrad3

DIOPT Version :9

Sequence 1:NP_609130.1 Gene:CG6739 / 34037 FlyBaseID:FBgn0031926 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_001124079.1 Gene:ldlrad3 / 570705 ZFINID:ZDB-GENE-030131-1533 Length:314 Species:Danio rerio


Alignment Length:362 Identity:81/362 - (22%)
Similarity:121/362 - (33%) Gaps:154/362 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   355 NCSVRAAEFICGALEPECRPLHIGQLPPCRRICKAILEACSIPIYNSDVLGELFDCNLYPDAHES 419
            :||. ...|:|.  :.||.|. .||                              |:.|||    
Zfish    26 HCSA-PGSFMCA--DGECVPA-AGQ------------------------------CDGYPD---- 52

  Fly   420 HKCEDPTRRR------DYCYGNEFQCHDG-SCIPQNWQCDKIKDCQGGEDEDEQC----LVCEPD 473
              |.|.:..|      ..|....|.|.:| .||...:||:..:||..|.||| .|    |:|...
Zfish    53 --CADRSDERGCLKLKSKCASTFFSCANGVHCIIGRFQCNGFRDCPDGSDED-NCTAHPLLCSSL 114

  Fly   474 EFRCRSNEKCLVEKYRCDQNIDCMDGSDEQDC------DEYGSGDLAPFDESELNAFPRVFTYA- 531
            .|.| :|.:|:...:.|:...:|.|.|||::|      .|:..|.|    :..|..:|.: ||| 
Zfish   115 RFHC-ANGRCVDRSFLCNGQDNCQDNSDEENCLTTAESPEHMLGTL----DYRLRYYPSI-TYAV 173

  Fly   532 ------------------------SFLSPNETNDKVYTYITATTDEDAGTETKFQIHQ------- 565
                                    |.|.|    .:||               :...||       
Zfish   174 IGSAIIFVLVVALLALVLHHQRKRSVLLP----QRVY---------------RGSCHQPLLLSRL 219

  Fly   566 --------------VAAPA--PPVNSSAEEGAGGPKGF--------------VNFRDSKEIMMTS 600
                          ..|||  ||..|.|...:|.|..|              ..:.:.:|   .:
Zfish   220 LIVERGHLLHPSRCPGAPADLPPSYSQAVRDSGRPVWFDLPPPPYPPPDREPPGYEEPEE---PA 281

  Fly   601 DSETKFKYSQRANRTSVKFSVSAPTTPAARTSSAIPS 637
            :::|      :.:.|||:.:..||.:||..:||:.|:
Zfish   282 EAQT------QTSVTSVEETPPAPPSPALPSSSSPPA 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6739NP_609130.1 CRD_FZ 314..427 CDD:143549 15/71 (21%)
LDLa 432..464 CDD:238060 12/32 (38%)
LDLa 470..505 CDD:238060 11/34 (32%)
LDLa 697..731 CDD:238060
ldlrad3NP_001124079.1 LDLa 30..62 CDD:238060 14/70 (20%)
LDLa 69..104 CDD:238060 14/35 (40%)
LDLa 111..145 CDD:238060 11/34 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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