DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6739 and ldlrad3

DIOPT Version :10

Sequence 1:NP_609130.1 Gene:CG6739 / 34037 FlyBaseID:FBgn0031926 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_001124079.1 Gene:ldlrad3 / 570705 ZFINID:ZDB-GENE-030131-1533 Length:314 Species:Danio rerio


Alignment Length:362 Identity:81/362 - (22%)
Similarity:121/362 - (33%) Gaps:154/362 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   355 NCSVRAAEFICGALEPECRPLHIGQLPPCRRICKAILEACSIPIYNSDVLGELFDCNLYPDAHES 419
            :||. ...|:|.  :.||.|. .||                              |:.|||    
Zfish    26 HCSA-PGSFMCA--DGECVPA-AGQ------------------------------CDGYPD---- 52

  Fly   420 HKCEDPTRRR------DYCYGNEFQCHDG-SCIPQNWQCDKIKDCQGGEDEDEQC----LVCEPD 473
              |.|.:..|      ..|....|.|.:| .||...:||:..:||..|.||| .|    |:|...
Zfish    53 --CADRSDERGCLKLKSKCASTFFSCANGVHCIIGRFQCNGFRDCPDGSDED-NCTAHPLLCSSL 114

  Fly   474 EFRCRSNEKCLVEKYRCDQNIDCMDGSDEQDC------DEYGSGDLAPFDESELNAFPRVFTYA- 531
            .|.| :|.:|:...:.|:...:|.|.|||::|      .|:..|.|    :..|..:|.: ||| 
Zfish   115 RFHC-ANGRCVDRSFLCNGQDNCQDNSDEENCLTTAESPEHMLGTL----DYRLRYYPSI-TYAV 173

  Fly   532 ------------------------SFLSPNETNDKVYTYITATTDEDAGTETKFQIHQ------- 565
                                    |.|.|    .:||               :...||       
Zfish   174 IGSAIIFVLVVALLALVLHHQRKRSVLLP----QRVY---------------RGSCHQPLLLSRL 219

  Fly   566 --------------VAAPA--PPVNSSAEEGAGGPKGF--------------VNFRDSKEIMMTS 600
                          ..|||  ||..|.|...:|.|..|              ..:.:.:|   .:
Zfish   220 LIVERGHLLHPSRCPGAPADLPPSYSQAVRDSGRPVWFDLPPPPYPPPDREPPGYEEPEE---PA 281

  Fly   601 DSETKFKYSQRANRTSVKFSVSAPTTPAARTSSAIPS 637
            :::|      :.:.|||:.:..||.:||..:||:.|:
Zfish   282 EAQT------QTSVTSVEETPPAPPSPALPSSSSPPA 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6739NP_609130.1 CRD_FZ 314..427 CDD:143549 15/71 (21%)
LDLa 432..464 CDD:238060 12/32 (38%)
LDLa 470..505 CDD:238060 11/34 (32%)
LDLa 697..731 CDD:238060
ldlrad3NP_001124079.1 LDLa 30..62 CDD:238060 14/70 (20%)
LDLa 69..104 CDD:238060 14/35 (40%)
LDLa 111..145 CDD:238060 11/34 (32%)
Blue background indicates that the domain is not in the aligned region.

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