DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6739 and Lrp3

DIOPT Version :10

Sequence 1:NP_609130.1 Gene:CG6739 / 34037 FlyBaseID:FBgn0031926 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_001019878.1 Gene:Lrp3 / 435965 MGIID:3584516 Length:790 Species:Mus musculus


Alignment Length:340 Identity:82/340 - (24%)
Similarity:115/340 - (33%) Gaps:94/340 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   432 CYGNEFQCHDGSCIPQNWQCDKIKDCQGGEDEDEQC---------LVCEPDEFRCRS--NEKCLV 485
            |..:||:|.:|.|:|..|||:.:.:|..|.||. .|         .:|....|.|..  :.:||.
Mouse   187 CQTDEFRCDNGKCLPGPWQCNMVDECGDGSDEG-NCSAPASEPPGSLCPGGTFPCSGARSTRCLP 250

  Fly   486 EKYRCDQNIDCMDGSDEQDCDEYGSGDLAPFDESELNAFPRVFTYASFLSPN------ETNDKVY 544
            .:.|||...||.|||||..|.:...|       ..|.:|     |.||.||:      ..:|...
Mouse   251 VERRCDGTQDCGDGSDEAGCPDLACG-------RRLGSF-----YGSFASPDLFGAARGPSDLHC 303

  Fly   545 TYITATTDE---------DAGTETKFQIHQVAAPAPPVNSSAEEGAGGPKGFVNFRDSKEIMMTS 600
            |::..|.|.         ..|.:...|::              ||.|        .....::.| 
Mouse   304 TWLVDTQDPRRVLLQLELRLGYDDYVQVY--------------EGLG--------ERGDRLLQT- 345

  Fly   601 DSETKFKYSQRANRTSVKF-SVSAPTTPA--ARTSSA---------IPSSALVQQRERTTSTTTT 653
                   .|.|:|...|.. :.....|.|  ||..||         :....|..::...:|   .
Mouse   346 -------LSYRSNHRPVSLEAAQGRLTVAYHARARSAGHGFNATYQVKGYCLPWEQPCGSS---E 400

  Fly   654 STTTSTTTSSITSTPSITSTTLIPINAATSEPNPYEVVTSLGGCPPQELRCV--SGKCITVSQLC 716
            ....||......|.|..........:....:..|        .|||.:..|.  ||.|...:..|
Mouse   401 GDDDSTGEQGCFSEPQRCDGWWHCASGRDEQGCP--------ACPPDQYPCEGGSGLCYAPADRC 457

  Fly   717 DKQIDCPDAADELMC 731
            :.|..|||.|||..|
Mouse   458 NNQKSCPDGADEKNC 472

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6739NP_609130.1 CRD_FZ 314..427 CDD:143549
LDLa 432..464 CDD:238060 13/31 (42%)
LDLa 470..505 CDD:238060 15/36 (42%)
LDLa 697..731 CDD:238060 15/35 (43%)
Lrp3NP_001019878.1 CUB 64..177 CDD:238001
LDLa 187..221 CDD:238060 14/34 (41%)
LDLa 233..270 CDD:238060 15/36 (42%)
CUB 275..385 CDD:238001 28/151 (19%)
LDLa 436..472 CDD:238060 15/35 (43%)
LDLa 475..509 CDD:238060
PspC_subgroup_2 <679..>764 CDD:468202
Blue background indicates that the domain is not in the aligned region.

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