DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6739 and Lrp8

DIOPT Version :10

Sequence 1:NP_609130.1 Gene:CG6739 / 34037 FlyBaseID:FBgn0031926 Length:787 Species:Drosophila melanogaster
Sequence 2:XP_006238632.1 Gene:Lrp8 / 362558 RGDID:1305729 Length:1013 Species:Rattus norvegicus


Alignment Length:459 Identity:102/459 - (22%)
Similarity:141/459 - (30%) Gaps:202/459 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   374 PLHIGQLP---------PCRRICKAILEACSIPIYNSDVLGELFDCNLYPDAHESHK--CED--- 424
            ||..||.|         .||.      |.|...::..|   |..||:...|..:..|  |.|   
  Rat    33 PLPGGQGPVKECEEDQFRCRN------ERCIPSVWRCD---EDNDCSDNSDEDDCPKRTCTDSDF 88

  Fly   425 --------PTRRRDYCYGNEFQCHDGS-------------------------CIPQNWQCDKIKD 456
                    |.|.:  |.|.| :|.|||                         |:|.:|:||..||
  Rat    89 TCDNGHCIPERWK--CDGEE-ECPDGSDESKATCSSEECPAEKLSCGPTSHKCVPASWRCDGEKD 150

  Fly   457 CQGGEDEDEQCLVCEPDEFRCRSNEKCLVEKYRCDQNIDCMDGSDEQDCDEYGSGDLAPFDESEL 521
            |:||.||.....:|.|.||:| ||..||...:.||.:.||.|||||:.|    |....|      
  Rat   151 CEGGADEAGCPTLCAPHEFQC-SNRSCLASVFVCDGDDDCGDGSDERGC----SDPACP------ 204

  Fly   522 NAFPRVFTYASFLSPNETNDKVYTYITATTDEDAGTETKFQIHQVAAPAPPVNSSAEEGAGG--- 583
               ||.|..                                                 |.||   
  Rat   205 ---PREFRC-------------------------------------------------GGGGTCI 217

  Fly   584 PKGFVNFRDSKEIMMTSDSETKFKYSQRANRTSV---KFSVSAPTTPAARTSSAIPSSALVQQRE 645
            |:.:|             .:.:|....|::..:.   :.......||||                
  Rat   218 PERWV-------------CDGQFDCEDRSDEAAELCGRAGQGTTATPAA---------------- 253

  Fly   646 RTTSTTTTSTTTS------------------TTTSSITSTPSI---------TSTTLIPINAATS 683
              .:.||..|..|                  .:..:..|.|..         ..|.::.|.....
  Rat   254 --CAPTTQFTCRSGECIHLGWRCDGDRDCKDKSDEADCSAPGPCRENDFQCGDGTCILAIKRCNQ 316

  Fly   684 EPNPYEVVTSLGGC-------PPQELRCVSGKCITVSQLCDKQIDCPDAADE--LMCV------Y 733
            |.:..: .:...||       .|:..:|.||:|:...::||.|.||.|.:||  .:||      .
  Rat   317 ERDCLD-GSDEAGCLQESTCEGPRRFQCKSGECVDGGKVCDDQRDCRDWSDEPQKVCVAPIFQGN 380

  Fly   734 RERP 737
            |.||
  Rat   381 RRRP 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6739NP_609130.1 CRD_FZ 314..427 CDD:143549 18/74 (24%)
LDLa 432..464 CDD:238060 18/56 (32%)
LDLa 470..505 CDD:238060 18/34 (53%)
LDLa 697..731 CDD:238060 14/42 (33%)
Lrp8XP_006238632.1 LDLa 44..78 CDD:238060 9/42 (21%)
LDLa 82..114 CDD:197566 11/34 (32%)
LDLa 124..160 CDD:238060 12/35 (34%)
LDLa 203..235 CDD:197566 11/102 (11%)
LDLa 256..289 CDD:238060 4/32 (13%)
LDLa 295..329 CDD:238060 3/34 (9%)
Ldl_recept_a 333..369 CDD:395011 13/35 (37%)
FXa_inhibition 390..424 CDD:464251
EGF_CA 426..456 CDD:214542
YncE <477..610 CDD:442618
LY 540..581 CDD:214531
Ldl_recept_b 602..642 CDD:459654
LY 626..668 CDD:214531
Ldl_recept_b 689..729 CDD:459654
FXa_inhibition 747..784 CDD:464251
Blue background indicates that the domain is not in the aligned region.

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