DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6739 and Lrp12

DIOPT Version :10

Sequence 1:NP_609130.1 Gene:CG6739 / 34037 FlyBaseID:FBgn0031926 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_001128355.1 Gene:Lrp12 / 314941 RGDID:1304943 Length:858 Species:Rattus norvegicus


Alignment Length:413 Identity:85/413 - (20%)
Similarity:126/413 - (30%) Gaps:179/413 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   416 AHESHKCEDPTRRRDYCYGNEFQCHDGSCIPQNWQCDKIKDCQGGEDEDEQCLV----------- 469
            |:.|.|.|:|     :|..::|:|.:|.|||:.|:|:.:.:|  |:..||:..|           
  Rat   155 AYFSGKSEEP-----HCACDQFRCGNGKCIPEAWKCNSMDEC--GDSSDEEVCVQDAHPPTTTAF 212

  Fly   470 --CEPDEFRCRSN----EKCLVEKYRCDQNIDCMDGSDEQDCDEYGSGDLAPFDESELNAFPRVF 528
              |..::|:|.|.    ..||.|..:||.||||:|..||.|||....|....            :
  Rat   213 QPCAYNQFQCLSRFTKVYTCLPESLKCDGNIDCLDLGDEIDCDMPTCGQWLK------------Y 265

  Fly   529 TYASFLSPN---------------ETND----------------------KVYTYITATTDEDAG 556
            .|.:|.|||               :|.|                      |:|..:.....:...
  Rat   266 FYGTFSSPNYPDFYPPGSNCTWLIDTGDHRKVILRFTDFKLDGTGYGDYVKIYDGLEENPRKLLR 330

  Fly   557 TETKFQIHQVAAPAPPVNSSAE-------EGAGGPKGF--------------------------- 587
            ..|.|..|   ||...|:||.:       :.....:||                           
  Rat   331 VLTAFDSH---APLTVVSSSGQIRVHFCADKVNAARGFNATYQVDGFCLPWEIPCGGNWGCYTEQ 392

  Fly   588 ---------VNFRDSKEIMMTSDSETKFKYSQRANRTSVKFSVSAPTTPAARTSSAIPSSALVQQ 643
                     .|.||  ||..|...:.:|                    |.:|.....|.|.....
  Rat   393 QRCDGYWHCPNGRD--EINCTMCQKEEF--------------------PCSRNGVCYPRSDRCNY 435

  Fly   644 RERTTSTTTTSTTTSTTTSSITSTPSITSTTLIPINAATSEPNPYEVVTSLGGCPPQELRCVSGK 708
            :....:                               .:.|.|.:       .|.|....|.:.:
  Rat   436 QNHCPN-------------------------------GSDEKNCF-------FCQPGNFHCKNNR 462

  Fly   709 CITVSQLCDKQIDCPDAADELMC 731
            |:..|.:||.|.||.|.:||..|
  Rat   463 CVFESWVCDSQDDCGDGSDEESC 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6739NP_609130.1 CRD_FZ 314..427 CDD:143549 5/10 (50%)
LDLa 432..464 CDD:238060 11/31 (35%)
LDLa 470..505 CDD:238060 16/38 (42%)
LDLa 697..731 CDD:238060 13/33 (39%)
Lrp12NP_001128355.1 CUB 47..158 CDD:238001 1/2 (50%)
LDLa 166..200 CDD:238060 13/35 (37%)
LDLa 215..254 CDD:238060 16/38 (42%)
CUB 267..371 CDD:238001 19/106 (18%)
LDLa 413..448 CDD:238060 6/85 (7%)
LDLa 451..485 CDD:238060 13/33 (39%)

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