DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6739 and rme-2

DIOPT Version :10

Sequence 1:NP_609130.1 Gene:CG6739 / 34037 FlyBaseID:FBgn0031926 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_500815.2 Gene:rme-2 / 177329 WormBaseID:WBGene00004374 Length:925 Species:Caenorhabditis elegans


Alignment Length:357 Identity:79/357 - (22%)
Similarity:109/357 - (30%) Gaps:114/357 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   436 EFQCHDG--SCIPQNWQCDKIKDCQGGEDEDEQCLV---CEPDEFRCRSNEKCLVEKYRCDQNID 495
            ||.|.:|  .|||..||||.:.||..|.|| ..|..   |......|: |..|:..:::||...|
 Worm    37 EFDCGNGRLRCIPAEWQCDNVADCDNGRDE-SGCSYAHHCSTSFMLCK-NGLCVANEFKCDGEDD 99

  Fly   496 CMDGSDEQDCDEYGSGDLAPFDESELNAFPRVFTYASFLSPNETNDKVYTYITATTDEDAGTETK 560
            |.||||||.|:                                     |..:          :::
 Worm   100 CRDGSDEQHCE-------------------------------------YNIL----------KSR 117

  Fly   561 FQIHQVAAPAPPVNSSAEEGAGGPKGFVNFRDSKEIMMTSDSETKFKYSQRANRTSVKFSVSAPT 625
            |.....:||...|      |..||:                                    ..|.
 Worm   118 FDGSNPSAPTTFV------GHNGPE------------------------------------CHPP 140

  Fly   626 TPAARTSSAI-PSSALVQQRERTTSTTTTSTTTSTTTSSITSTPSITSTTLIPINAATSEPNPYE 689
            ....|:...| |........:.:......:.|.....:..:||.......|:......:|.|.  
 Worm   141 RLRCRSGQCIQPDLVCDGHTDCSGGDDEVNCTRRGHENMQSSTDFHDDVHLVDPTFFANEDNK-- 203

  Fly   690 VVTSLGGCPPQELRCVSGK-CITVSQLCDKQIDCPDAADELMCVYRERPSRRRLTSTTAPPTTS- 752
                   |......|.||. ||..|.|||..:||.||:||..| ....||.....|..|....| 
 Worm   204 -------CRSGYTMCHSGDVCIPDSFLCDGDLDCDDASDEKNC-QTNAPSEEEYLSGQADHMHSC 260

  Fly   753 SAPPETSTATTTTG-----PLSSTRRSLRTTP 779
            ||....|..|..:.     |:::|...::..|
 Worm   261 SAAGMYSCGTKGSEIGVCIPMNATCNGIKECP 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6739NP_609130.1 CRD_FZ 314..427 CDD:143549
LDLa 432..464 CDD:238060 15/29 (52%)
LDLa 470..505 CDD:238060 14/34 (41%)
LDLa 697..731 CDD:238060 16/34 (47%)
rme-2NP_500815.2 LDLa 37..69 CDD:238060 16/32 (50%)
LDLa 75..109 CDD:238060 14/34 (41%)
LDLa 137..171 CDD:238060 4/33 (12%)
FXa_inhibition 309..337 CDD:464251
vWFA <337..375 CDD:469594
Ldl_recept_b 527..569 CDD:459654
LY 552..594 CDD:214531
LY 595..634 CDD:214531
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.