DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6739 and lrp-1

DIOPT Version :10

Sequence 1:NP_609130.1 Gene:CG6739 / 34037 FlyBaseID:FBgn0031926 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_001379135.1 Gene:lrp-1 / 172520 WormBaseID:WBGene00003071 Length:4753 Species:Caenorhabditis elegans


Alignment Length:624 Identity:138/624 - (22%)
Similarity:185/624 - (29%) Gaps:238/624 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 DESTELPE----IAFGDDGDPEAGGEDGDGDYDDTLLPADSIRFTSGHQNSFG-----------V 251
            |.|.||.:    :|..|.|.|.|...|   .:.|.|...|:      |.|..|           :
 Worm  3464 DGSPELQDPIFKLAEHDLGWPNAIAID---YFSDRLFWGDA------HLNEIGFMDFDGNGRRHI 3519

  Fly   252 PIEQDKRMLQL-------------LKELLHKPQATPAGNEPTLTRVSPTLPPPLSASGRPTEAMA 303
            |.::...:..:             |:|:|...:.|  |...|:.:.:..||..|... .|....|
 Worm  3520 PAQRTSHVSSMVVFDDYLYWADWNLREVLRCDKWT--GKNETILKKTVQLPNDLRIV-HPMRQPA 3581

  Fly   304 LTTP-STTNSGCQSTMLPMCQGVLDYDLTFNREGAAPRDAVSMAAYDSLIRANCSVRAAEFICGA 367
            ...| ...|.||....|....|        |....:..|...:.:.......||:.|  :|.||.
 Worm  3582 YPNPCGDNNGGCSHLCLIGAGG--------NGYTCSCPDQFVLLSDQKTCEPNCTER--QFACGG 3636

  Fly   368 LEPECRP--LHIGQLPPCR-------------RICKAILEACSIPIYNSDVLGELFDCNLYPDAH 417
            .:.:|.|  .:....|.||             |||         |:      || |.|.      
 Worm  3637 DDAKCIPKLWYCDGEPDCRDGSDEPGESICGQRIC---------PV------GE-FQCT------ 3679

  Fly   418 ESHKCEDPTRRRDYCYGNE-------------------FQC-HDGSCIPQNWQCDKIKDCQGGED 462
             :|.|   ||....|.||:                   |:| ..|.|||:.:.||...||....|
 Worm  3680 -NHNC---TRPFQICDGNDDCGDSSDEQNCDKACDPWMFKCAATGRCIPRRFTCDGDDDCGDRSD 3740

  Fly   463 E-DEQCLV----CEPDEFRCRSNEKCLVEKYRCDQNIDCMDGSDEQDCDEYGSGDLAPFDESELN 522
            | |..|:.    |..:|||| :|.||:.:.:|||.:.||.|||||                    
 Worm  3741 EADTLCMSAERNCTAEEFRC-NNNKCIAKAWRCDNDDDCGDGSDE-------------------- 3784

  Fly   523 AFPRVFTYASFLSPNETNDKVYTYITATTDEDAGTETKFQIHQVAAPAPPVNSSAEEGAGGPKGF 587
                                        |.|.|..|.|                        ||:
 Worm  3785 ----------------------------TPECAQIECK------------------------KGW 3797

  Fly   588 VNFRDSKEIMMTSDSETKFKYSQRANRTSVKFSVSAPTTPAARTSSAIPSSALVQQRERTTSTTT 652
                            |:...|.|                      .||:.|....::.....:.
 Worm  3798 ----------------TRCSSSYR----------------------CIPNWAFCNGQDDCRDNSD 3824

  Fly   653 TSTTTSTTTSSITSTPSITSTTLIPINAATSEPNPY-----EVVTSLGG----CPPQELRCVSGK 708
            .......|...:......||...||........|..     |:..|.||    |...|.||..||
 Worm  3825 EDKQRCPTCDDVGEFRCATSGKCIPRRWMCDTENDCGDNSDELDASCGGTTRPCSESEFRCNDGK 3889

  Fly   709 CITVSQLCDKQIDCPDAADELMCVYRE-RPSRRRLTSTT 746
            ||..|::||..|.|.|..||..|..|. .|..|:....|
 Worm  3890 CIPGSKVCDGTIQCSDGLDESQCTLRRCLPGHRQCDDGT 3928

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6739NP_609130.1 CRD_FZ 314..427 CDD:143549 26/127 (20%)
LDLa 432..464 CDD:238060 15/52 (29%)
LDLa 470..505 CDD:238060 18/34 (53%)
LDLa 697..731 CDD:238060 16/33 (48%)
lrp-1NP_001379135.1 LDLa 53..87 CDD:238060
LDLa 92..131 CDD:238060
LDLa 140..173 CDD:238060
LDLa 182..216 CDD:238060
LDLa 223..257 CDD:238060
LDLa 262..297 CDD:238060
YncE <376..564 CDD:442618
LY 547..589 CDD:214531
LY 883..925 CDD:214531
LDLa 1057..1087 CDD:197566
LDLa 1100..1133 CDD:197566
LDLa 1146..1177 CDD:197566
LDLa 1187..1219 CDD:238060
LDLa 1228..1263 CDD:238060
LDLa 1270..1302 CDD:238060
LDLa 1313..1344 CDD:238060
FXa_inhibition 1447..1475 CDD:464251
LY 1511..1545 CDD:214531
LY 1548..1585 CDD:214531
LY 1590..1634 CDD:214531
LY 1635..1677 CDD:214531
Vgb <1921..2043 CDD:443399
LY 2193..2239 CDD:214531
LY 2240..2283 CDD:214531
LY 2284..2325 CDD:214531
Ldl_recept_b 2582..2629 CDD:459654
LY 2613..2655 CDD:214531
LDLa 2794..2824 CDD:197566
LDLa 2834..2868 CDD:238060
LDLa 2874..2907 CDD:197566
LDLa 2961..2994 CDD:238060
LDLa 3012..3038 CDD:238060
LDLa 3048..3088 CDD:197566
LDLa 3099..3131 CDD:197566
LDLa 3140..3174 CDD:238060
LDLa 3186..3218 CDD:197566
FXa_inhibition 3276..3305 CDD:464251
LY 3382..3424 CDD:214531
Ldl_recept_b 3445..3491 CDD:459654 10/29 (34%)
LY 3476..3516 CDD:214531 12/48 (25%)
FXa_inhibition 3586..3623 CDD:464251 7/44 (16%)
LDLa 3627..3660 CDD:197566 10/34 (29%)
LDLa 3671..3705 CDD:238060 13/59 (22%)
LDLa 3792..3825 CDD:197566 10/94 (11%)
LDLa 3837..3868 CDD:238060 6/30 (20%)
LDLa 3878..3912 CDD:238060 16/33 (48%)
LDLa 3917..3951 CDD:238060 3/12 (25%)
LDLa 3958..3990 CDD:197566
LDLa 4049..4083 CDD:238060
FXa_inhibition 4097..>4121 CDD:464251
EGF_CA 4132..4163 CDD:214542
NHL 4219..>4431 CDD:302697
NHL repeat 4219..4257 CDD:271332
NHL repeat 4267..4330 CDD:271332
NHL repeat 4333..4371 CDD:271332
NHL repeat 4373..4410 CDD:271332
Blue background indicates that the domain is not in the aligned region.

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