DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6739 and lrp-2

DIOPT Version :10

Sequence 1:NP_609130.1 Gene:CG6739 / 34037 FlyBaseID:FBgn0031926 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_491270.2 Gene:lrp-2 / 171981 WormBaseID:WBGene00003072 Length:4858 Species:Caenorhabditis elegans


Alignment Length:468 Identity:104/468 - (22%)
Similarity:149/468 - (31%) Gaps:145/468 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   328 YDLTFNREGAAPRDAVSMAAYDSLIRANCSVRAAEFICGALEPECRPLHI----GQLPPCRRICK 388
            |:.|.:|....|       .:|......||.|.           |||.:.    |...|.:::|.
 Worm  2655 YEDTCDRYNDCP-------MFDDEDTKYCSTRV-----------CRPGYFNCGNGLCIPEQKVCN 2701

  Fly   389 AILEACSIPIYNSDVLGELFDCNLYPDAHESHKCEDPTRRRDYCYGNEFQCHDGSCIPQNWQCDK 453
            .|                 .||..:.|  ||: |.        |..|||:|..|:|||...:|:.
 Worm  2702 RI-----------------NDCANFAD--ESN-CT--------CNENEFRCQSGACIPSKARCNH 2738

  Fly   454 IKDCQGGEDE----DEQCLVCEPDEF------RCRSNEKCLVEKYRCDQNIDCMDGSDEQDCDEY 508
            ::||....||    ...|...  :||      .|.:..:|:...::||...||.|||||:||   
 Worm  2739 MQDCNDASDEIGCPFRNCSAL--NEFGMTGLINCATTSQCIHPSWKCDGTNDCYDGSDEKDC--- 2798

  Fly   509 GSGDLAPFDESELNAFPRVFTYASFLSPNETNDKVYTYITAT-------------------TDE- 553
                ...||.          |..|..:|...:.|......||                   :|| 
 Worm  2799 ----FVEFDA----------TGGSVSAPRSCDAKTQFACLATRTCMPKHWQCDGQPDCADGSDEK 2849

  Fly   554 --DAGTETKFQIH-QVAAPAPPVNSSAEEGAGGPKGFVNFRDSKEIMMTSDSETKFKYSQRANRT 615
              ||...|.|:.. :.:....|:....:.....|.|    .|..:.....||:......:..|..
 Worm  2850 NCDAKKCTSFEFSCESSKKCIPLEQKCDGRRDCPDG----EDEHQCETECDSKGGNATFRCTNHR 2910

  Fly   616 SVKFSVSAPTT-----------------PAARTSSAIPSSALVQQRERTTSTTTTSTTTSTTTSS 663
            .:..:.....|                 .|.|||..:||..          ...|.......|:.
 Worm  2911 CIPMAWRCDGTDDCMDNAKSLGSDEVDCAAGRTSFHVPSRC----------ADETCVVACELTAV 2965

  Fly   664 ITSTPSITSTTLIPINAATSEPNPYEVVTSLGGCPPQELRCVSGKCITVSQLCDKQIDCPDAADE 728
            :.......|......|.|:.:..          |.|.|..|.||:||...:|||..:||.|.:||
 Worm  2966 LCDGIQDCSDGFDEKNCASLDRQ----------CKPNEWMCDSGQCIDSGRLCDASVDCVDGSDE 3020

  Fly   729 L--MCVYRERPSR 739
            .  :|...|.|.|
 Worm  3021 WVEICSLSEPPRR 3033

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6739NP_609130.1 CRD_FZ 314..427 CDD:143549 21/102 (21%)
LDLa 432..464 CDD:238060 14/35 (40%)
LDLa 470..505 CDD:238060 13/40 (33%)
LDLa 697..731 CDD:238060 16/35 (46%)
lrp-2NP_491270.2 LDLa 80..119 CDD:197566
LDLa 130..162 CDD:197566
LY 668..702 CDD:214531
LY 707..758 CDD:214531
LY 759..801 CDD:214531
LDLa 968..1000 CDD:197566
LDLa 1013..1047 CDD:238060
LDLa 1053..1087 CDD:238060
LDLa 1098..1129 CDD:238060
LDLa 1144..1175 CDD:238060
LDLa 1182..1216 CDD:238060
LDLa 1227..1261 CDD:197566
FXa_inhibition 1276..1305 CDD:464251
FXa_inhibition 1314..1344 CDD:464251
LY 1421..1463 CDD:214531
LY 1465..1508 CDD:214531
LY 1521..1555 CDD:214531
FXa_inhibition 2270..2309 CDD:464251
YvrE 2360..>2531 CDD:442613
LY 2480..2521 CDD:214531
LDLa 2681..2715 CDD:238060 12/53 (23%)
LDLa 2717..2751 CDD:238060 14/33 (42%)
LDLa <2774..2798 CDD:238060 10/23 (43%)
LDLa 2819..2851 CDD:238060 4/31 (13%)
LDLa 2856..2891 CDD:238060 6/38 (16%)
LDLa 2904..2938 CDD:238060 2/33 (6%)
LDLa 2988..3020 CDD:197566 14/41 (34%)
LY 3231..3270 CDD:214531
Ldl_recept_b 3296..3336 CDD:459654
LY 3319..3362 CDD:214531
LY 3363..3404 CDD:214531
LDLa 3481..3514 CDD:197566
LDLa 3527..3564 CDD:197566
LDLa 3574..3609 CDD:238060
LDLa 3614..3649 CDD:197566
LDLa 3659..3693 CDD:238060
LDLa 3881..3912 CDD:238060
LY 4084..4125 CDD:214531
LY 4139..4181 CDD:214531
Blue background indicates that the domain is not in the aligned region.

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