DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6739 and Lrp8

DIOPT Version :9

Sequence 1:NP_609130.1 Gene:CG6739 / 34037 FlyBaseID:FBgn0031926 Length:787 Species:Drosophila melanogaster
Sequence 2:XP_011238756.1 Gene:Lrp8 / 16975 MGIID:1340044 Length:1010 Species:Mus musculus


Alignment Length:445 Identity:103/445 - (23%)
Similarity:133/445 - (29%) Gaps:185/445 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   366 GALEP---------------ECRPLHIGQLP---------PCRRICKAILEACSIPIYNSDVLGE 406
            |||.|               ...||..||.|         .||.      |.|...::..|   |
Mouse     7 GALRPLALLLLLLLQLQHLSAADPLPGGQGPVKECEEDQFRCRN------ERCIPLVWRCD---E 62

  Fly   407 LFDCNLYPDAHESHK--CED-----------PTRRRDYCYGNEFQCHDGS--------------- 443
            ..||:...|..:..|  |.|           |.|.:  |.|.| :|.|||               
Mouse    63 DNDCSDNSDEDDCPKRTCADSDFTCDNGHCIPERWK--CDGEE-ECPDGSDESKATCSSEECPAE 124

  Fly   444 ----------CIPQNWQCDKIKDCQGGEDEDEQCLVCEPDEFRCRSNEKCLVEKYRCDQNIDCMD 498
                      |:|.:|:||..|||:||.||.....:|.|.||:| ||..||...:.||.:.||.|
Mouse   125 KLSCGPTSHKCVPASWRCDGEKDCEGGADEAGCPTLCAPHEFQC-SNRSCLASVFVCDGDDDCGD 188

  Fly   499 GSDEQDCDEYGSGDLAPFDESELNAFPRVFTYASFLSPNETNDKVYTYITATTDEDAGTETKFQI 563
            ||||:.|    |....|         ||.|..                                 
Mouse   189 GSDERGC----SDPACP---------PREFRC--------------------------------- 207

  Fly   564 HQVAAPAPPVNSSAEEGAGG---PKGFVNFRDSKEIMMTSDSETKFKYSQRANRTSVKFSVSAPT 625
                            |.||   |:.:|..|.       .|.|.:   |..|.....:.......
Mouse   208 ----------------GGGGTCIPERWVCDRQ-------FDCEDR---SDEAAELCGRAGQGTTA 246

  Fly   626 TPAARTSSA---IPSSALVQQRERTTSTTTTSTTTSTTTSSITSTPSITSTTLIPINAATSEPNP 687
            ||||...:|   ..|...:....|..........:.                    .|..|.|.|
Mouse   247 TPAACAPTAQFTCRSGECIHLGWRCDGDRDCKDKSD--------------------EADCSAPGP 291

  Fly   688 YEVVTSLGGCPPQELRCVSGKCITVSQLCDKQIDCPDAADELMCVYR---ERPSR 739
                     |...|.:|..|.|:...:.|:::.||||.:||..|:..   |.|.|
Mouse   292 ---------CRENEFQCGDGTCVLAIKRCNQERDCPDGSDEAGCLQESTCEGPRR 337

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6739NP_609130.1 CRD_FZ 314..427 CDD:143549 22/97 (23%)
LDLa 432..464 CDD:238060 18/56 (32%)
LDLa 470..505 CDD:238060 18/34 (53%)
LDLa 697..731 CDD:238060 12/33 (36%)
Lrp8XP_011238756.1 LDLa 41..75 CDD:238060 9/42 (21%)
LDLa 79..111 CDD:197566 11/34 (32%)
LDLa 121..157 CDD:238060 12/35 (34%)
LDLa 200..232 CDD:197566 13/99 (13%)
LDLa 256..286 CDD:238060 3/49 (6%)
LDLa 292..326 CDD:238060 12/33 (36%)
LDLa 330..366 CDD:381805 3/8 (38%)
FXa_inhibition 387..421 CDD:373209
EGF_CA 423..453 CDD:214542
LY 492..527 CDD:214531
LY 537..578 CDD:214531
Ldl_recept_b 599..639 CDD:278487
LY 623..665 CDD:214531
Ldl_recept_b 686..725 CDD:278487
FXa_inhibition 744..781 CDD:373209
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1215
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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