DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6739 and ldlrad3

DIOPT Version :10

Sequence 1:NP_609130.1 Gene:CG6739 / 34037 FlyBaseID:FBgn0031926 Length:787 Species:Drosophila melanogaster
Sequence 2:NP_001096330.1 Gene:ldlrad3 / 100124916 XenbaseID:XB-GENE-989860 Length:337 Species:Xenopus tropicalis


Alignment Length:409 Identity:89/409 - (21%)
Similarity:129/409 - (31%) Gaps:141/409 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   403 VLGELFDCNLYPDAHESHKCEDPTRRRDYCYGNEFQCHDGSCIPQNWQCDKIKDCQGGEDEDEQC 467
            :||.: :..|.|..:.:.:|..|        || |.|.:|.|||..||||...||....||.| |
 Frog     7 ILGSV-ESQLLPGNNHTTECNIP--------GN-FMCSNGRCIPGGWQCDGNPDCFDESDEKE-C 60

  Fly   468 ----LVCEPDEFRCRSNEKCLVEKYRCDQNIDCMDGSDEQDCDEYGSGDLAPF--DESELNAFPR 526
                ..|.|:.|.|.|...|::.:::|:...||.|||||::|..:      |.  ..|..:....
 Frog    61 PRARSRCGPNFFPCTSGIHCIIARFQCNGFEDCPDGSDEENCTAH------PLLCSNSRFHCKNH 119

  Fly   527 VFTYASFLSPNETNDKVYTYITATTDEDAGTETKFQIHQVAAPAPPVNSSAEEGAGGPKGFVNFR 591
            :....||:...:.|      ....:||:       ..|   :|..|         |..:.:|:  
 Frog   120 LCIDKSFVCDGQNN------CLDNSDEE-------HCH---SPQEP---------GSEQDYVS-- 157

  Fly   592 DSKEIMMTSDSETKFKYSQRANRTSVKFSV-------------------SAPTTPAARTSSAIPS 637
                      ||.:..|......|.:..||                   :..:.|..|....:..
 Frog   158 ----------SENQLLYYPSITYTIIGSSVIFVLVVALLALVLHHQRKRNLMSLPVHRLQHPLLL 212

  Fly   638 SALV----QQRERTTSTTTTSTTTSTTTS-----SITSTPSITSTTL----------IPINAATS 683
            |.||    ....|.|..........:...     |:.|.||.|...|          :|      
 Frog   213 SRLVVLDHPHHCRVTYNVNNGIQYMSGQGYQQPVSVESPPSYTEAVLDHSSRPPWFDLP------ 271

  Fly   684 EPNPYEVVTSLGGCPPQELRCVSGKCITVSQLCDKQIDCPDAADELMCVYRERPSRRRLTSTTAP 748
             |.||          |.::..||            |.:.|.        ||.|........:|..
 Frog   272 -PPPY----------PSDMESVS------------QTELPP--------YRSRTGSSASAGSTEH 305

  Fly   749 P------TTSSAPPETSTA 761
            |      |.|...|:..||
 Frog   306 PRGTPCGTESPTEPQDPTA 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6739NP_609130.1 CRD_FZ 314..427 CDD:143549 6/23 (26%)
LDLa 432..464 CDD:238060 15/31 (48%)
LDLa 470..505 CDD:238060 14/34 (41%)
LDLa 697..731 CDD:238060 5/33 (15%)
ldlrad3NP_001096330.1 LDLa 28..60 CDD:238060 18/41 (44%)
LDLa 67..102 CDD:238060 14/34 (41%)
LDLa 109..143 CDD:238060 6/46 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 243..337 25/119 (21%)

Return to query results.
Submit another query.