DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spn28B and serpina3m

DIOPT Version :10

Sequence 1:NP_609128.2 Gene:Spn28B / 34035 FlyBaseID:FBgn0083141 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_001025693.1 Gene:serpina3m / 595085 XenbaseID:XB-GENE-6453454 Length:413 Species:Xenopus tropicalis


Alignment Length:424 Identity:110/424 - (25%)
Similarity:189/424 - (44%) Gaps:73/424 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LLLLATSVES-----GFWED-----------------------FYRILASQNAK------RNLIY 36
            :||:|..|||     |..||                       .|:.:||...|      :|:.:
 Frog     7 VLLIAVIVESDNHDDGISEDNKELSEEELKEILAQLNMHFAVNIYKQVASSALKEKNSEPKNIFF 71

  Fly    37 SPISAEIIMSMVYMASGGKTFEELRNVLKFSE---NKTLVANNYRSLLSDLKRRETFIILHMANR 98
            ||:|....::|:.:.:..:|..::.|.|...|   .:..:.|.::.||..|.:.:..:.:.:.|.
 Frog    72 SPVSISTSLAMLALGAKAETRHQILNSLAPKETPIQEVKIHNAFKHLLQTLNKPKKDLKITVGNA 136

  Fly    99 IYVNKKYCLVPEFNQLARKAFKAKAKSIRLDDPVSASAIVNSWILNRTRGMIRNIVLPKDFNSDT 163
            .:|.::...:..|...|.:.::|...|....:|..|...:|:::.|:|.|.|:.:|  :..:.||
 Frog   137 AFVEEELKFLKSFAHEAERYYQADVFSTNFKNPKDAEIQINNYVNNQTNGKIKELV--RGPSMDT 199

  Fly   164 SAFLVNAIYFKGQWLYNFKADQTHIADFYVSANEIIPVKMMTLSASLLSGYIDDIDAKIIELPYW 228
            ...|||.|.|||:|...|..|.|.::.|.:.....:.||||:..........:::...:::|||.
 Frog   200 KLLLVNYILFKGEWESPFSPDFTRLSVFSIDNRTKVEVKMMSRMGRFDIFLDNELPCTVLKLPYI 264

  Fly   229 NSTLSMRIILPNSVDGLRKLKEKVGFID--------YHLEKKSVNVKLPKFKIESKAQLKGIFEN 285
            :..| |.:|:|.    |.|::|....:.        ....||.:.:.:|||.|.|..:||.|..:
 Frog   265 DDAL-MLLIMPE----LGKIQEVEAALSKDTILRWRNSTSKKFLRLYMPKFSISSSLKLKEILSD 324

  Fly   286 LGILDVFKPSADLNGLVLESGAKIDKIVQKAFLKIDEKGGEASAATGV------LTRRKKSIDNL 344
            :|:.::|...||.:|:|.:....:.|::.||.|.:||||.||:|.|.|      |.:.:|     
 Frog   325 VGMSNIFSDQADFSGIVEDGKLTLSKVIHKAVLDVDEKGTEAAAVTAVNVIRYSLLKSQK----- 384

  Fly   345 IQPPMEFIADHPFFYVI--HDNKVIYFQGHIVEP 376
                    .|.||..||  .....|.|.|.||.|
 Frog   385 --------VDRPFLVVICSKQTDTILFMGRIVNP 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn28BNP_609128.2 serpin42Dd-like_insects 12..376 CDD:381070 106/416 (25%)
serpina3mNP_001025693.1 serpinA 43..410 CDD:381073 100/386 (26%)

Return to query results.
Submit another query.