DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn28B and Spn55B

DIOPT Version :9

Sequence 1:NP_001260209.1 Gene:Spn28B / 34035 FlyBaseID:FBgn0083141 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_524953.1 Gene:Spn55B / 49803 FlyBaseID:FBgn0028983 Length:374 Species:Drosophila melanogaster


Alignment Length:369 Identity:113/369 - (30%)
Similarity:203/369 - (55%) Gaps:21/369 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 FWEDFYRILASQNAKRNLIYSPISAEIIMSMVYMASGGKTFEELRNVLKFSEN-KTLVANNYRSL 80
            |..:.:::|::...|.|:::||.|.:..:::.:..|.|:|.:|:...|.|..| ...||..::.:
  Fly    15 FTSELFQLLSAGGLKENVVFSPFSIQTCIALAFAGSQGETADEIAKALHFVSNFPPEVAQTFQFV 79

  Fly    81 LSDLKRRETFIILHMANRIYVNKKYCLVPEFNQLARKAFKAKAKSIR--LDDPVSASAIVNSWIL 143
            |...:...   :|.:||::||.:...|.|.:....::.:.::|:||.  |:|  :|:..:|:|:.
  Fly    80 LEKYRNSN---LLRVANKLYVQEGKQLKPAYQSAIKEQYHSEAESINFALND--AAAQAINAWVN 139

  Fly   144 NRTRGMIRNIVLPKDFNSDTSAFLVNAIYFKGQWLYNFKADQTHIADFYVSANEIIPVKMMTLSA 208
            .:|:|.|..:|....|:.:|...|:||::|||.|.:.|..::|....|:|...|.:.:..|...|
  Fly   140 AKTQGKITELVSADSFSDNTRLVLLNALHFKGSWAHKFSEERTEEDIFWVGEEEQVKINYMNQKA 204

  Fly   209 SLLSGYIDDIDAKIIELPYWNSTLSMRIILPNSVDGLRKLKEK---VGFIDY--HLEKKSVNVKL 268
            ....|:.:|:....:|:||.:|.|||.::||....|:..|.||   |..:|.  .|..:.|:||.
  Fly   205 KFNYGFFEDLGCTALEMPYQDSDLSMFVLLPQERTGIYALAEKLKTVNLVDLADKLTVEEVHVKF 269

  Fly   269 PKFKIESKAQLKGIFENLGILDVFKPSADLNGLVLES--GAKIDKIVQKAFLKIDEKGGEASAAT 331
            ||||::...:|....:.|||..:|...|:.:.| |||  |..:.|::.||.::::|:|.||:|||
  Fly   270 PKFKVDYSLELAEKLKQLGITKMFTDQAEFSNL-LESPEGVFVSKVLHKATIEVNEEGTEAAAAT 333

  Fly   332 GVLTRRKKSIDNLIQPPMEFIADHPFFYVIHDNKVIYFQGHIVE 375
            |::     .:..::..|::|.||.||.|||.:.|.|.|.|..|:
  Fly   334 GMI-----MMTRMMTFPLQFQADRPFLYVIWNKKNILFAGAFVK 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn28BNP_001260209.1 SERPIN 17..373 CDD:238101 112/365 (31%)
Spn55BNP_524953.1 SERPIN 13..370 CDD:238101 112/365 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45446378
Domainoid 1 1.000 172 1.000 Domainoid score I1138
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 172 1.000 Inparanoid score I1521
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D140751at6656
OrthoFinder 1 1.000 - - FOG0000050
OrthoInspector 1 1.000 - - mtm1112
orthoMCL 1 0.900 - - OOG6_100128
Panther 1 1.100 - - P PTHR11461
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X28
109.900

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