DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spn28B and Serpinb12

DIOPT Version :10

Sequence 1:NP_609128.2 Gene:Spn28B / 34035 FlyBaseID:FBgn0083141 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_001129339.1 Gene:Serpinb12 / 304692 RGDID:1566382 Length:421 Species:Rattus norvegicus


Alignment Length:416 Identity:106/416 - (25%)
Similarity:196/416 - (47%) Gaps:61/416 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 FWEDFYRILASQNAKRNLIYSPISAEIIMSMVYMASGGKTFEELRNVLKFSE------------- 68
            |..||::.::..:|.:|:...|:|......||.:.:.|.:.:::..||.|:|             
  Rat    11 FCFDFFQEISKDDAHKNIFVCPLSLSAAFGMVRLGARGDSAQQIDEVLHFNELPKDERKEPSEPS 75

  Fly    69 ----------------------------NKTLVANNYRSLLSDLKRRETFIILHMANRIYVNKKY 105
                                        ...|:..::..|||.:.|.:....|.||||:|..:::
  Rat    76 SKSKASDSSLEGQKQTTASQGQQGESTNEHRLLGCHFGKLLSRIDRDKAHYTLSMANRLYGEQEF 140

  Fly   106 CLVPEFNQLARKAFKAKAKSIRLD-DPVSASAIVNSWILNRTRGMIRNIVLPKDFNSDTSAFLVN 169
            .:.||::....:.:....:|:... |...:...:|.|:.::::|.|:.:...:..::.|...|||
  Rat   141 PICPEYSDDITEFYHTTIESVDFQKDTEKSREEINFWVESQSQGKIKELFDKEAIDNSTVLVLVN 205

  Fly   170 AIYFKGQWLYNFKADQTHIADFYVSANEIIPVKMMTLSASLLSGYIDDIDAKIIELPYWNSTLSM 234
            |:|||.:|...|.::.|..|.|.:|.||...||||........|:|:::.|:|:|:.|....|||
  Rat   206 AVYFKAKWEKEFDSENTVDAPFCLSENEKKTVKMMNQKGQFRIGFIEELQAQILEMKYTTGKLSM 270

  Fly   235 RIILPNS----VDGLRKLKEKVGFIDY-------HLEKKSVNVKLPKFKIESKAQLKGIFENLGI 288
            .::||:|    |..|::|::|:.....       ::.:|.|.:..|:|.:|....|..:.:::||
  Rat   271 LVLLPSSSEDNVKSLQELEKKINHEKLLAWSNPENMSEKPVAISFPQFIMEDSYDLNSVLQDMGI 335

  Fly   289 LDVFK-PSADLNGLVLESGAKIDKIVQKAFLKIDEKGGEASAATGVLTRRKKSIDNLIQPPMEFI 352
            .|||. ..|||.|:.......:.|:|.|.|:::||.|.:|:||:|.:...|     .:...:||.
  Rat   336 RDVFDGTKADLTGISKSPSLHLSKVVHKTFVEVDEMGTQAAAASGAVVAEK-----ALPSRVEFN 395

  Fly   353 ADHPFFYVIHDN--KVIYFQGHIVEP 376
            |:.||.:.|..|  :.:.|.|.:..|
  Rat   396 ANRPFLFFIRHNGTQSLLFCGRVYSP 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn28BNP_609128.2 serpin42Dd-like_insects 12..376 CDD:381070 105/414 (25%)
Serpinb12NP_001129339.1 serpinB12_yukopin 1..421 CDD:381037 105/414 (25%)

Return to query results.
Submit another query.