DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn28B and Serpina3m

DIOPT Version :10

Sequence 1:NP_609128.2 Gene:Spn28B / 34035 FlyBaseID:FBgn0083141 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_001257911.1 Gene:Serpina3m / 299276 RGDID:735068 Length:419 Species:Rattus norvegicus


Alignment Length:394 Identity:104/394 - (26%)
Similarity:190/394 - (48%) Gaps:47/394 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LLATSVESGFWEDFYRILASQNAKRNLIYSPISAEIIMSMVYMASGGKTFEELRNVLKFS---EN 69
            |...|:.:.|....|::||.:|..:|:::||:|....:::|.:.:.|.|.||:..||:|:   ..
  Rat    45 LTLESINTDFAFSLYKMLALKNPDKNVVFSPLSISAALAIVSLGAKGNTLEEILEVLRFNLTESY 109

  Fly    70 KTLVANNYRSLLSDLKRRETFIILHMANRIYVNKKYCLVPEFNQLARKAFKAKAKSIRLDDPVSA 134
            :|.:...:..||..|.:....:.:...|.::::|...::.||.:..|..::.:|.:.....|...
  Rat   110 ETDIHQGFGHLLQRLSQPGDQVKIITGNALFIDKNLQVLAEFQEKTRALYQVEAFTADFQQPRVT 174

  Fly   135 SAIVNSWILNRTRGMIRNIVLPKDFNSDTSAFLVNAIYFKGQWLYNFKADQTHIADFYVSANEII 199
            ..::|.::.|:|:|.|:.:|  ......||..|||.:.|:|:|...|..|.|..::|||.....:
  Rat   175 EKLINDYVRNQTQGKIQELV--SGLKERTSMVLVNYLLFRGKWKVPFDPDYTFESEFYVDEKRSV 237

  Fly   200 PVKMMTLSASLLSGYI--DDIDAKIIELPYWNSTLSMRIILPN-----------SVDGLRKLKEK 251
            .|.||.:. .|.:.|.  :::...::||.|..:: |...|||:           ..:.|:|.|:.
  Rat   238 KVSMMKIE-ELTTPYFRDEELSCSVLELKYTGNS-SALFILPDKGRMQQVEASLQPETLKKWKDS 300

  Fly   252 VGFIDYHLEKKSVNVKLPKFKIESKAQLKGIFENLGILDVFKPSADLNGLVLESGAK---IDKIV 313
            :      ..:|...:.||:..|.:...|:.:...|||.|||...|||:.:   :|||   :.::|
  Rat   301 L------RPRKIDELYLPRLSISTDYSLEEVLPELGIRDVFSQQADLSRI---TGAKDLSVSQVV 356

  Fly   314 QKAFLKIDEKGGEASAATGVLTRRKKSIDNLI----QPPMEFIADHPFFYVI-HDN-KVIYFQGH 372
            .|..|.::|.|.||:||||.         ||:    :|||....:.||...: |.: :.|.|...
  Rat   357 HKVVLDVNETGTEAAAATGA---------NLVPRSGRPPMIVWFNRPFLIAVSHTHGQTILFMAK 412

  Fly   373 IVEP 376
            ::.|
  Rat   413 VINP 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn28BNP_609128.2 serpin42Dd-like_insects 12..376 CDD:381070 102/388 (26%)
Serpina3mNP_001257911.1 serpinA3_A1AC 37..416 CDD:381019 103/392 (26%)

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