DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn28B and Serpina3k

DIOPT Version :9

Sequence 1:NP_001260209.1 Gene:Spn28B / 34035 FlyBaseID:FBgn0083141 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_035588.2 Gene:Serpina3k / 20714 MGIID:98377 Length:418 Species:Mus musculus


Alignment Length:388 Identity:107/388 - (27%)
Similarity:193/388 - (49%) Gaps:33/388 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LLATSVESGFWEDFYRILASQNAKRNLIYSPISAEIIMSMVYMASGGKTFEELRNVLKFSENKTL 72
            |...||.:.|....|:.||.:|..:|:::||:|....:::|.:.:.|||.||:...|||:..:|.
Mouse    46 LTLASVNTDFAFSLYKKLALKNQDKNIVFSPLSISAALALVSLGAKGKTMEEILEGLKFNLTETP 110

  Fly    73 VAN---NYRSLLSDLKRRETFIILHMANRIYVNKKYCLVPEFNQLARKAFKAKAKSIRLDDPVSA 134
            .|:   .:.:||..|.:.|....:::.|.:::.|...::.||::..|..::.:|.:.....|..|
Mouse   111 EADIHQGFGNLLQSLSQPEDQDQINIGNAMFIEKDLQILAEFHEKTRALYQTEAFTADFQQPTEA 175

  Fly   135 SAIVNSWILNRTRGMIRNIVLPKDFNSDTSAFLVNAIYFKGQWLYNFKADQTHIADFYVSANEII 199
            ..::|.::.|:|:|||:.::  .:.:..|...|||.|||||:|..:|....|..::||:.....:
Mouse   176 KNLINDYVSNQTQGMIKKLI--SELDDGTLMVLVNYIYFKGKWKISFDPQDTFESEFYLDEKRSV 238

  Fly   200 PVKMMTLSASLLSGYID-DIDAKIIELPYWNSTLSMRIILPN-----------SVDGLRKLKEKV 252
            .|.||.:.......:.| ::...::||.| ....|..:|||:           ..:.|||.::.:
Mouse   239 KVPMMKMKLLTARHFRDEELSCSVLELKY-TGNASALLILPDQGRMQQVEASLQPETLRKWRKTL 302

  Fly   253 GFIDYHLEKKSVNVKLPKFKIESKAQL-KGIFENLGILDVFKPSADLNGLVLESGAKIDKIVQKA 316
                  ...:...:.||||.|.|..:| :.:...:||.:||...|||:|:.......:.::|.||
Mouse   303 ------FSSQIEELNLPKFSIASDYRLEEDVLPEMGIKEVFTEQADLSGITEAKKLSVSQVVHKA 361

  Fly   317 FLKIDEKGGEASAATGVLTRRKKSIDNLIQPPMEFIADHPFFYVIHDNKV--IYFQGHIVEPR 377
            .|.:.|.|.||:|||||:...:|:    :.|.:.|  :.||..||:....  |.|...:..|:
Mouse   362 VLDVAETGTEAAAATGVIGGIRKA----VLPAVCF--NRPFLIVIYHTSAQSILFMAKVNNPK 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn28BNP_001260209.1 SERPIN 17..373 CDD:238101 103/373 (28%)
Serpina3kNP_035588.2 SERPIN 57..417 CDD:214513 102/374 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11461
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X28
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.100

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