DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn28B and srp-2

DIOPT Version :9

Sequence 1:NP_001260209.1 Gene:Spn28B / 34035 FlyBaseID:FBgn0083141 Length:378 Species:Drosophila melanogaster
Sequence 2:NP_503318.1 Gene:srp-2 / 178586 WormBaseID:WBGene00005643 Length:359 Species:Caenorhabditis elegans


Alignment Length:379 Identity:105/379 - (27%)
Similarity:189/379 - (49%) Gaps:45/379 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 LLLLATSVESGFWEDFYRILASQNAKRNLIYSPISAEIIMSMVYMASGGKTFEELRNVLKFSENK 70
            |.||||...||                :::.||:|..:.:::::..:.|.|.:||.:||..|.  
 Worm    13 LKLLATLPHSG----------------SVVLSPLSISLGLALIHAGACGSTQKELEDVLGGSR-- 59

  Fly    71 TLVANNYRSLLSDLKRRETFIILHMANRIYVNKKYCLVPEFNQLARKAFKAKAKSIRLDDPVSAS 135
              :...:..|:..:...:..:...:.||::||:.|.:..::.:...|.:||..:|:.......|:
 Worm    60 --IFEEFSGLMEAVGDTDNGVETKIVNRVFVNQAYTIHQDYLETVEKLYKASGESLDFSQTEQAA 122

  Fly   136 AIVNSWILNRTRGMIRNIVLPKDFNSDTSAFLVNAIYFKGQWLYNFKADQTHIADFYVSANEIIP 200
            ..:|:::.|.|.|.|:::: |.|..::..||||||:|||..|...|..:.|...:|:.|..|...
 Worm   123 KTMNTFVENHTNGKIKDLI-PADSANNAFAFLVNAMYFKADWQSKFAKESTTGREFFTSEAESRQ 186

  Fly   201 VKMMTLSASLLSGYIDDIDAKIIELPYWNSTLSMRIILPNS----VDGLRKLK-EKVGFIDYHLE 260
            :..:| .......|.:|:..:::.|.|.:...::.|.||..    ||.|.|:. |.:..:...|:
 Worm   187 IPFLT-ELDEHRDYTEDVLFQVLSLKYADPKFTLAIFLPKQRFGLVDALEKINGEYIQNLLNDLK 250

  Fly   261 KKSVNVKLPKFKIESKAQLKGIFENLGILDVFKPSADLNGLVLESGAKIDKI-----VQKAFLKI 320
            ...|:|::||||||.:..||...|.:||.::|...|||:|:.       ||:     :.||.:::
 Worm   251 SSYVSVQIPKFKIEKELDLKETLEAIGIKEIFAEGADLSGIA-------DKVFISSGIHKAIIEV 308

  Fly   321 DEKGGEASAATGVLTRRKKSIDNLIQ-PPMEFIADHPF-FYVIHDNKVIYFQGH 372
            ||.|..|:||:..    |..::.:|. .|.:|:||||| |.|:.:|..::...|
 Worm   309 DEDGTTAAAASAF----KVQLEMMIMAEPTQFVADHPFLFAVLFENHTLFLGVH 358

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn28BNP_001260209.1 SERPIN 17..373 CDD:238101 98/368 (27%)
srp-2NP_503318.1 serpinL_nematode 7..358 CDD:381047 104/377 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H76659
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57242
OrthoDB 1 1.010 - - D556621at33208
OrthoFinder 1 1.000 - - FOG0000050
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100128
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X28
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
98.930

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