DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RapGAP1 and Garnl3

DIOPT Version :9

Sequence 1:NP_001097114.2 Gene:RapGAP1 / 34032 FlyBaseID:FBgn0264895 Length:959 Species:Drosophila melanogaster
Sequence 2:NP_001342129.1 Gene:Garnl3 / 99326 MGIID:2139309 Length:1078 Species:Mus musculus


Alignment Length:525 Identity:174/525 - (33%)
Similarity:252/525 - (48%) Gaps:74/525 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 RG-SNASEERVPQPHSPHDSHAHPHNGGLQHSGSRATLRHSMNHSSSSTVSGSACSSTPASPQLS 241
            || |..|....|||..|   ...|...|...|....||......|.|..:.......| ..|:|.
Mouse    23 RGCSFESPSTAPQPPGP---LMDPLTKGSCGSQLAQTLLWKAKSSLSFGIQPLQTWPT-KDPELE 83

  Fly   242 GVVSAS-----GCQL--LSNGHHYQSQSSVSSNSSIVSAIPASQRLL-------EEALAKPAPYP 292
            ..|:.|     ||:.  .|..|:...:..:||::.  .||..:.|..       |.|.|.|    
Mouse    84 SQVNLSVSEDLGCRRGDFSRKHYGSVELLISSDAD--GAIQRAGRFRVENGSTDESAAALP---- 142

  Fly   293 MILLPLHGGYWMDGTEHECGYDARGNPLLPQTTWMAKFETDDTAKCYRRFYAAREHSNLIGLDEQ 357
                    |.|.....|      ..||.. .|.|            |.:::..:.|.|.||.|.:
Mouse   143 --------GTWRRTDVH------LENPEY-HTRW------------YFKYFLGQVHQNYIGNDAE 180

  Fly   358 LGPILLSIKTENVANQ---EHMRILMRLRTGTMHELLPVSCLLPQPSPAKMAHTLNENITVEHF- 418
            ..|..||:...:..||   ::..||.| :|||....||.|     |:......::...:.::.| 
Mouse   181 KSPFFLSVTLSDQNNQRVPQYRAILWR-KTGTQKICLPYS-----PTKTLSVKSILSAMNLDKFE 239

  Fly   419 ---MPILCPKASQLISVYDEHVLVSHFKFGVLYQRYGQTTEEELFGNQQTSPAFDEFLDVLGQRI 480
               ..|..|:..:.:.|.:|.....:||||||:.:.||.|::|:|.|:..|.||.:||::||..|
Mouse   240 KGPREIFHPEIQKDLLVLEEQEGSVNFKFGVLFAKDGQLTDDEMFSNEIGSEAFQKFLNLLGDTI 304

  Fly   481 RLKDHKGYRGGLDIQNGHTGDTAVYEVFKEREIMFHVSTLLPHTEGDPQQLQRKRHIGNDIVAIV 545
            .||...|||||||.:|..||..:||.|::..|:||||||:||:::.:.||::||||||||||.||
Mouse   305 TLKGWTGYRGGLDTKNNTTGINSVYTVYQGHEVMFHVSTMLPYSKENRQQVERKRHIGNDIVTIV 369

  Fly   546 FQ---ETNTPFSPDMIASHFLHAFIVVQPIEPNTPHTRYKVSVTARDDVPFFGPTLPNPAVFRKG 607
            ||   |::..|.|.||.|||.|.|.:|:..:.|   ..|::.:.:.:.||.|||.||:|.||...
Mouse   370 FQEGEESSPAFKPSMIRSHFTHIFALVRYDQQN---DNYRLKIFSEESVPLFGPPLPSPPVFTDH 431

  Fly   608 QEFKEFILTKLINAENACYKAEKFAKLEQRTRTSLLQNLCEELREKTRDFLGTDLSQTSAGSPTP 672
            |||::|:|.||||.|.|..:...||:..:||...|:::|.::|..   |.....|::.|.....|
Mouse   432 QEFRDFLLVKLINGEKATLETPTFAQKRRRTLDMLIRSLYQDLMP---DLHKNMLNRRSFSDVLP 493

  Fly   673 ETPKA 677
            |:||:
Mouse   494 ESPKS 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RapGAP1NP_001097114.2 GoLoco 147..168 CDD:280368
Rap_GAP 460..639 CDD:280332 87/181 (48%)
Garnl3NP_001342129.1 Rap_GAP 284..462 CDD:307998 86/180 (48%)
CNH 556..861 CDD:307087
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167841932
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3686
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.740

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