DRSC/TRiP Functional Genomics Resources

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Protein Alignment RapGAP1 and ralgapa2

DIOPT Version :9

Sequence 1:NP_001097114.2 Gene:RapGAP1 / 34032 FlyBaseID:FBgn0264895 Length:959 Species:Drosophila melanogaster
Sequence 2:XP_001920508.2 Gene:ralgapa2 / 568210 ZFINID:ZDB-GENE-131122-56 Length:2015 Species:Danio rerio


Alignment Length:646 Identity:148/646 - (22%)
Similarity:237/646 - (36%) Gaps:142/646 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 SEERVPQPHSPHDSHAHPHNGGLQHSGSRATLRH--SMNHSSSSTVSGSACSSTPASPQLSGVVS 245
            |.|.:|.......:|...|.|....||..|.|..  |.||.:....|....|....||.|...| 
Zfish  1446 SMELIPLTARMVMTHLVNHLGHHPLSGGPALLNSLISENHDNPYVESSELSSEVFKSPNLQLFV- 1509

  Fly   246 ASGCQLLSNGHHYQSQSSVSSNSSIVSAIPASQRLLEEALAKPAPYPMILLPLHGGY-W------ 303
            .:...|:|    |....|.:||::.:||.|...         .:...:|:..:.|.| |      
Zfish  1510 FNDSTLIS----YLQIPSDNSNTAPLSANPRDH---------SSEVRIIIRDISGKYSWDSGVLF 1561

  Fly   304 --MDGT-----------EHECG-YDARGNPLLPQTTWMAKFETDDTAKCYRRFYAAREHSNLIGL 354
              :|||           .||.. .:.|.:....:.:  ::.:.:|......:......||:...|
Zfish  1562 RTLDGTGVTSSDSREQSSHEAARLEKRSSVRFSKCS--SELDVEDGVDVLDQLLEDLGHSSPECL 1624

  Fly   355 DE-QL-------GPILLSIKTENV--------ANQEHMRILMR------LRTGTMHELLPVSCLL 397
            .| ||       .|:.::::.|.:        :.||...::.|      :|.....|  |..   
Zfish  1625 PEPQLRLTQPPSPPMGMNLEIEGLIMEAVHRQSKQEEEELMRRQIEDPSVRAERQKE--PTH--- 1684

  Fly   398 PQP-SPAKMAHTLNENITVE--------HFMPILCPKASQL---ISVYDEHVLVSHFKFGVLYQR 450
            .:| ||..:...|..::.:.        |    |..|.|:|   :...|........|..|.|..
Zfish  1685 QEPKSPFYLCRLLLNDLGMNSWDRRKSFH----LLKKNSKLLRELKNLDSRQCRETHKIAVFYIG 1745

  Fly   451 YGQTTEEELFGNQQTSPAFDEFLDVLGQRIRLKDHKGYRGGLDIQNGHTGDTAVYEVFKEREIMF 515
            .||..:..:..|.|.|..:::|:..||..:.|..|.|:.|||. :||.||.||.|......|::|
Zfish  1746 EGQEDKYSILSNTQGSQVYEDFVSGLGWEVNLATHCGFMGGLQ-RNGSTGSTAPYYATSNVEVIF 1809

  Fly   516 HVSTLLPHTEGDPQQLQRKRHIGNDIVAIVFQETNTPFSPDMIASHFLHAFIVVQPIEPNTPHTR 580
            ||||.:| ::.|....::.||:|||.|.||:.|....:...:|.:.|....:::.|::    :..
Zfish  1810 HVSTRMP-SDSDDSITKKLRHLGNDEVHIVWSEHTRDYRRGIIPTDFGDVLVIIYPMK----NHM 1869

  Fly   581 YKVSVTARDDVPFFGPTLPNPAVFRKGQEFKEFILTKLINAENACYKAEKFAKLEQRTRTSLLQN 645
            :.|.:..:..||||||......|  .|:.....:....|||..|.           ::|..|.|:
Zfish  1870 FFVQIMKKPQVPFFGPLFDGAIV--TGELLPSLVRATCINASRAV-----------KSRLPLYQS 1921

  Fly   646 LCEE--------LREKTRDFLGTDLSQTSAGSPTPETPKAESGSGGNAGSRFIDTVKKALIMRVR 702
            ..||        ::....:....|.: ....||:|     .....|.|||....|          
Zfish  1922 FYEERALYLEAIIQNHKENMTFEDFA-AQVFSPSP-----SYWPSGGAGSLSCST---------- 1970

  Fly   703 SQSVDTGNGHGPGQTDKFSVNTKLGTLNSKKETHPEMQTPNLNTCSRTASKSSSK-SKSSN 762
              |.|              ::..:.|.:|..:..|.:.....|..|....:|:|. |||||
Zfish  1971 --SAD--------------LSVSVMTNDSGDQVSPTIPRATKNRVSGKLRRSASAISKSSN 2015

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RapGAP1NP_001097114.2 GoLoco 147..168 CDD:280368
Rap_GAP 460..639 CDD:280332 52/178 (29%)
ralgapa2XP_001920508.2 Rap_GAP 1755..1927 CDD:280332 57/190 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3686
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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