DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RapGAP1 and zmp:0000001168

DIOPT Version :9

Sequence 1:NP_001097114.2 Gene:RapGAP1 / 34032 FlyBaseID:FBgn0264895 Length:959 Species:Drosophila melanogaster
Sequence 2:XP_009301927.1 Gene:zmp:0000001168 / 555294 ZFINID:ZDB-GENE-140106-128 Length:1274 Species:Danio rerio


Alignment Length:754 Identity:212/754 - (28%)
Similarity:322/754 - (42%) Gaps:175/754 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 RMIKYW---RNSSG-KIPGLRKSESFAEYR--------RHSSNSATI----SGGSGGR-----SS 80
            |::..|   |:..| ...|...:||....|        :.|::..|:    |.|..||     ..
Zfish    37 RVLAEWPPRRDGDGTNTEGTPSTESALNLRTAGRGHIMQRSNSDVTLGDLDSTGQVGRKLLRVDK 101

  Fly    81 TSSARQLQYQRLEMESCENIDMLTEPLRRQHAFMANTQKQQPAGGGSGSGSVTHSPERLRGATTA 145
            |.::.|.:|                 |.|::..:::.::|..:...:..|::  ||..||     
Zfish   102 TGTSAQGEY-----------------LHREYGSLSSLERQTQSVDPTAEGAL--SPNALR----- 142

  Fly   146 TQDLFELLERVQCSRLDDQRCVLPAYFSQNHHRG--SNASEERVPQPH--------SPHDSHAHP 200
            .:|.|.||      .|.:....:..:|...:...  :|:...:.|:|.        ||..:|...
Zfish   143 FRDPFVLL------GLQEAPPEVDGFFQSLNPPAVDANSKPAKPPKPEGLGKKSKPSPPQAHQFS 201

  Fly   201 HNGGLQHSG--------------------SRATLRHSMNHSSSSTVSGSACS-------STPASP 238
            .:.|:  ||                    ..||.|.|:....:.|...||.|       |||:| 
Zfish   202 CDQGV--SGGAWVRNFAHYDVQSILFDLSEAATNRDSIGRKKNITSGASAASQLRPLAQSTPSS- 263

  Fly   239 QLSGVVSASGC---------------QLLSNGH-----------HYQSQSSVSSNSSIVSAIPAS 277
                 ||..||               .||..|.           |::::  :....|:...:|..
Zfish   264 -----VSQGGCGGSIGGGAGSDDVEQSLLDEGDGNDNDLLLSCPHFRNE--MGGEESVGLGLPRP 321

  Fly   278 QRLLEEALAKPAPYPMILLPLHGGYWMDGTEHECGYDARGNPLLPQTTWMAKFETDDT-AKCYRR 341
            .|....:...|.....:|                 .:.|.:.:.||.......|..|. |:.|.:
Zfish   322 GRYRWRSFQSPNDAVSVL-----------------EEPRESHVQPQGKSNYFIEHADLGARYYHK 369

  Fly   342 FYAAREHSNLIGLDEQLGPILLSIKTE----NVANQEHMRILMR------LRTGTMHELLPVSCL 396
            ::..::|.|..|:|::|||:.:|.:.|    :..:|.:.||:.|      ||...:.|.:|.:..
Zfish   370 YFYMKDHQNFFGMDDRLGPVAVSFRREEKEGSSGSQYNYRIIFRTTELKTLRGSILEESVPSAAR 434

  Fly   397 LPQP---SPAKMAHTLNENITVEHFMPIL---C-------PKASQLISVYDEHVLVSHFKFGVLY 448
            ...|   ||.::         :|..:|.|   |       ||....:...||..|....|.||:|
Zfish   435 HTTPRGLSPKRL---------LEFILPDLNLHCLRLASTSPKVRDTLLKLDEQGLNFQRKVGVMY 490

  Fly   449 QRYGQTTEEELFGNQQTSPAFDEFLDVLGQRIRLKDHKGYRGGLDIQNGHTGDTAVYEVFKEREI 513
            .|.||:|||:::.|:...|.|:||||:||.|:|||..:.||..||.:...||..::|..:::.||
Zfish   491 CRAGQSTEEDMYNNESAGPVFEEFLDLLGDRVRLKGWEKYRAQLDTKTDSTGTHSLYTRYQDYEI 555

  Fly   514 MFHVSTLLPHTEGDPQQLQRKRHIGNDIVAIVFQETNT-PFSPDMIASHFLHAFIVVQPIEPNTP 577
            ||||||:||:|..:.|||.|||||||||:.|||||... ||:|..|.|||.|.||:|:..||.|.
Zfish   556 MFHVSTMLPYTANNKQQLLRKRHIGNDIITIVFQEPGALPFTPKAIRSHFQHVFIIVRVHEPCTE 620

  Fly   578 HTRYKVSVTARDDVPFFGPTLPNPAVFRKGQEFKEFILTKLINAENACYKAEKFAKLEQRTRTSL 642
            :|.|:|:||...|:|.|||..|..|.|.:...|::|:|.|.||||||..|:|||..:..|||...
Zfish   621 NTYYRVAVTRSKDIPLFGPLFPKGARFPRSAAFRDFLLAKAINAENAAEKSEKFRSMATRTRQEY 685

  Fly   643 LQNLCEELREKTRDFLGTDLSQTSAGSPTPETPKAESGS 681
            |::|.|.....|.....|.....|.|....:..|...|:
Zfish   686 LKDLAENYVTTTPIDSSTKFPLLSLGGKRKDKLKGAKGA 724

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RapGAP1NP_001097114.2 GoLoco 147..168 CDD:280368 5/20 (25%)
Rap_GAP 460..639 CDD:280332 90/179 (50%)
zmp:0000001168XP_009301927.1 Rap_GAP 502..682 CDD:307998 90/179 (50%)
PDZ_signaling <841..909 CDD:238492
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.