DRSC/TRiP Functional Genomics Resources

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Protein Alignment RapGAP1 and Sipa1

DIOPT Version :10

Sequence 1:NP_001097114.2 Gene:RapGAP1 / 34032 FlyBaseID:FBgn0264895 Length:959 Species:Drosophila melanogaster
Sequence 2:NP_001004089.2 Gene:Sipa1 / 361710 RGDID:1303184 Length:1040 Species:Rattus norvegicus


Alignment Length:714 Identity:217/714 - (30%)
Similarity:288/714 - (40%) Gaps:233/714 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 GGSGSGSVTHSPERLRG-ATTATQDLFELLERVQCSRLDDQRCVLPAYFSQNHHRGSNASEERVP 188
            ||.|      ||.  || |...|.|||                               |.:.|.|
  Rat     4 GGVG------SPR--RGMAPAPTDDLF-------------------------------ARKLRQP 29

  Fly   189 --QPHSPHDSHAHPHNGGLQHSGSRATLRHSMNHSSSSTVSGSACSSTPASPQLSGVVSASGCQL 251
              .|.:||.....|..|.|..|||.|               |.....|||||:            
  Rat    30 ARPPLTPHTFEPRPARGPLLRSGSDA---------------GEVRPPTPASPR------------ 67

  Fly   252 LSNGHHYQSQSSVSSNSSIVSAIPASQRLLEEALA-------KPAP-YPMILLP----------- 297
             :..|.::       ::|..:|.|.  ||..:.||       :|.| :|.:|.|           
  Rat    68 -ARAHSHE-------DTSRPAATPT--RLFTDPLALLGLPAEEPEPTFPPVLEPRWFAHYDVQSL 122

  Fly   298 ----------------------------------LHG--GYWMD-GTEHECGYDARGNPLLP--- 322
                                              |.|  |:..: |.|.|.|.   |.|:.|   
  Rat   123 LFDWAPRPRATGSHTESNSGTLALAEDQTTTSDLLLGAPGFVSELGGEGELGL---GGPISPPVP 184

  Fly   323 ----------------QTTWMAKFETDDTAKCYRRFYAAREHSNLIGLDEQLGPILLSIKTENVA 371
                            :||..:....|..|..||:::..:||.|..||||.|||:.:|::.|...
  Rat   185 PALPNASVSVLEEPQTRTTAYSLEHADLGAGYYRKYFYGKEHQNFFGLDEALGPVAVSLRREEKE 249

  Fly   372 NQ-----EHMRILMR---LRT--GTMHELLPVSCLLPQP----SPAKMAHTLNENITVEHFMPIL 422
            ..     ...|:::|   |||  ||:.|    ..|.|.|    ||.|:         :||..|.|
  Rat   250 GSGGGTLHSYRVIVRTTQLRTLRGTISE----DALPPGPPRGLSPRKL---------LEHVAPRL 301

  Fly   423 ---C-------PKASQLISVYDEHVLVSHFKFGVLYQRYGQTTEEELFGNQQTSPAFDEFLDVLG 477
               |       ||..:.:...||.||....|.|:||.|.||.:|||::.||:...||.:||.:||
  Rat   302 SPTCLRLGSASPKVPRTLLTLDEQVLSFQRKVGILYCRAGQGSEEEMYNNQEAGAAFMQFLTLLG 366

  Fly   478 QRIRLKDHKGYRGGLDIQNGHTGDTAVYEVFKEREIMFHVSTLLPHTEGDPQQLQRKRHIGNDIV 542
            ..:|||..:.||..||.:...||..::|..:::.||||||||:||:|..:.|||.||||||||||
  Rat   367 DVVRLKGFENYRAQLDTKTDSTGTHSLYTTYQDHEIMFHVSTMLPYTPNNQQQLLRKRHIGNDIV 431

  Fly   543 AIVFQETNT-PFSPDMIASHFLHAFIVVQPIEPNTPHTRYKVSVTARDDVPFFGPTLP-NPAVFR 605
            .|||||..: ||.|..|.|||.|.|:||:...|.||||.|:|:|:...|.|.|||.|| ....|.
  Rat   432 TIVFQEPGSKPFCPTTIRSHFQHVFLVVRAHAPCTPHTSYRVAVSRTQDTPAFGPALPEGGGPFA 496

  Fly   606 KGQEFKEFILTKLINAENACYKAEKFAKLEQRTRTSLLQNLCEELREKTRDFLGTDLSQTSA-GS 669
            ...:|:.|:|.|.:|.|.|...|.:|..:..|||...||:|.      |.:...|.|...|. |.
  Rat   497 ANADFRAFLLAKALNGEQAAGHARQFHAMATRTRQQYLQDLA------TNEVTTTSLDSASRFGL 555

  Fly   670 P--------TPETPKAESGSGGNAGSRFIDTVKKALIMRVR-------SQSVDTGNGHGPGQTD 718
            |        ||.:|.||..:.|            ||:..||       |...:||   ||...:
  Rat   556 PSLGGRRRATPRSPGAELQAAG------------ALMWGVRAAPGARVSAGAETG---GPDHAE 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RapGAP1NP_001097114.2 GoLoco 147..168 CDD:460481 3/20 (15%)
Rap_GAP 460..639 CDD:460463 84/180 (47%)
Sipa1NP_001004089.2 PHA03378 <29..>112 CDD:223065 29/119 (24%)
Rap_GAP 349..530 CDD:460463 84/180 (47%)
PDZ_SIPA1-like 685..757 CDD:467227
YhaN <903..>1025 CDD:443752
ZapB 972..1028 CDD:428718
Blue background indicates that the domain is not in the aligned region.

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