DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RapGAP1 and Ralgapa2

DIOPT Version :9

Sequence 1:NP_001097114.2 Gene:RapGAP1 / 34032 FlyBaseID:FBgn0264895 Length:959 Species:Drosophila melanogaster
Sequence 2:XP_006499580.1 Gene:Ralgapa2 / 241694 MGIID:3036245 Length:1966 Species:Mus musculus


Alignment Length:619 Identity:136/619 - (21%)
Similarity:206/619 - (33%) Gaps:194/619 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   141 GATTATQDLFELLERVQCSRLD--------DQRCVLPAYFSQNHHRGS---------NASEERVP 188
            |::|.||.....|.....|..|        :.|...|..:..:...|:         ..|.|.:|
Mouse  1392 GSSTYTQQSHYTLTLADLSSTDYDPFLPLANVRNSEPIQYHSSADLGNLLTVEEEKKRRSVELIP 1456

  Fly   189 QPHSPHDSHAHPHNGGLQHSGSRATLRHSM---NHSSSSTVSGSACSSTPASPQLSGVVSASGCQ 250
            .......:|...|.|....||..|.| ||:   ||.::........|....||.|          
Mouse  1457 LTARMVMAHLVNHLGHYPLSGGPAVL-HSLVSENHDNAHVEGTELSSEVFRSPNL---------- 1510

  Fly   251 LLSNGHHYQSQSSVSSNSSIVSAIPASQRLLEEALAKPAPYP-------------MILLPLHGGY 302
                      |..|.::|:::|           .|..||..|             :|:..:.|.|
Mouse  1511 ----------QLFVFNDSTLIS-----------YLQTPAEGPAGGTSGGSLSDVRVIVRDISGKY 1554

  Fly   303 WMDGT-------------------------EHECGYDARGNPLLPQTTWMAKFETDDTAKCYRRF 342
            ..||.                         .|.||         ||.......|.||.       
Mouse  1555 SWDGKVLYGPLEGRLAPNGRNPSFQISGWHHHTCG---------PQKDLFNGEEGDDV------- 1603

  Fly   343 YAAREHSNLIGLDEQLG--------PILLSIK----TENVANQEHMRILMR--LRTGTMHELLPV 393
                    |..|.|.:|        |..|::.    |....|.:..:.:|.  ||.....:....
Mouse  1604 --------LDKLLENIGHTSPECLLPSQLNLNEPSPTPCAMNWDQEKAIMEVILRQSAQEDEYVQ 1660

  Fly   394 SC---------LLPQPSPA------------------------KMAHTLNENITVEHFMPILCPK 425
            .|         ...||||.                        |..|.|.:|           .|
Mouse  1661 RCNSDSSVTVTSQGQPSPVEPRGPFYFCRLLLDDLGMNSWDRRKNFHLLKKN-----------SK 1714

  Fly   426 ASQLISVYDEHVLVSHFKFGVLYQRYGQTTEEELFGNQQTSPAFDEFLDVLGQRIRLKDHKGYRG 490
            ..:.:...|........|..|.|...||..:..:..|::.|.|:::|:..||..:.|..|.|:.|
Mouse  1715 LLRELKNLDSRQCRETHKIAVFYIAEGQEDKCSILANERGSQAYEDFVAGLGWEVDLSTHCGFMG 1779

  Fly   491 GLDIQNGHTGDTAVYEVFKEREIMFHVSTLLPHTEGDPQQLQRKRHIGNDIVAIVFQETNTPFSP 555
            ||. :||.||.||.|......|::|||||.:| ::.|....::.||:|||.|.||:.|.:..:..
Mouse  1780 GLQ-RNGSTGQTAPYYATSTVEVIFHVSTRMP-SDSDDSLTKKLRHLGNDEVHIVWSEHSRDYRR 1842

  Fly   556 DMIASHFLHAFIVVQPIEPNTPHTRYKVSVTARDDVPFFGPTLPNPAVFRKGQEFKEFILTKLIN 620
            .:|.:.|....|::.|::    :..:.:::|.:.:||||||......|  .|:.....|....||
Mouse  1843 GIIPTAFGDVSIIIYPMK----NHMFFITITKKPEVPFFGPLFDGAIV--SGKLLPSLICATCIN 1901

  Fly   621 AENA--C-------YKAEKFAKLEQRTRTSLLQN 645
            |..|  |       :..|:...||     :::||
Mouse  1902 ASRAVKCLIPLYQSFYEERALYLE-----AIIQN 1930

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RapGAP1NP_001097114.2 GoLoco 147..168 CDD:280368 5/28 (18%)
Rap_GAP 460..639 CDD:280332 58/187 (31%)
Ralgapa2XP_006499580.1 Rap_GAP 1749..1921 CDD:366939 56/179 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3686
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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