DRSC/TRiP Functional Genomics Resources

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Protein Alignment RapGAP1 and rap1gapb

DIOPT Version :9

Sequence 1:NP_001097114.2 Gene:RapGAP1 / 34032 FlyBaseID:FBgn0264895 Length:959 Species:Drosophila melanogaster
Sequence 2:XP_009300955.1 Gene:rap1gapb / 100538309 ZFINID:ZDB-GENE-131119-39 Length:721 Species:Danio rerio


Alignment Length:839 Identity:307/839 - (36%)
Similarity:419/839 - (49%) Gaps:167/839 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 HSSNSATISGGSGGRSST-SSARQLQYQRLEMESCENIDMLTEPLRRQHAFMANTQKQQPAGGGS 127
            |...|.|. |..||...| |.:|.:..|.      ..|..:::||.|                  
Zfish     3 HRKRSFTF-GAYGGVDKTFSRSRHVWKQD------GRIPRISDPLER------------------ 42

  Fly   128 GSGSVTHSPERLRGATTATQDLFELLERVQCSRLDDQRCVLPAYFSQNHHRGSNASEERVPQPHS 192
             .|.|...|.........|.|:|.::||:|.||:|:|||.||...        ...|:.:|.| |
Zfish    43 -PGRVKSLPPLPAQTLLKTSDIFAMIERMQSSRMDEQRCSLPPPL--------KTEEDYIPYP-S 97

  Fly   193 PHDSHAHPHNGGLQHSGSRATLRHSMNHSSSSTVSGSACSSTPASPQLSGVVSASGCQLLSNGHH 257
            .|                                                               
Zfish    98 VH--------------------------------------------------------------- 99

  Fly   258 YQSQSSVSSNSSIVSAIPASQRLLEEALAKPAPYPMILLPLHGGYWMDGTEHECGYDARGNPLLP 322
                                     |.|.:....|:||||..||||::||.|:.|..:......|
Zfish   100 -------------------------EVLGRTGTLPLILLPQFGGYWIEGTNHDLGSSSTPEEPPP 139

  Fly   323 QTTWMAKFETDDTAKCYRRFYAAREHSNLIGLDEQLGPILLSIKTENVANQEHMRILMRLRTGTM 387
            ......|.||:..||.||:.:..:||.|...:|..||.::.|:|.:.:.:|||:|:|:|.|..|.
Zfish   140 CPASQVKLETNSIAKIYRKDFLGKEHFNYYSVDSALGHLIFSMKYDVIGDQEHLRLLLRSRFKTY 204

  Fly   388 HELLPVSCLLPQPSPAKMAHTLNENITVEHFMPILCPKASQLISVYDEHVLVSHFKFGVLYQRYG 452
            |:::|:|||...|:..:||..:.|.:.|:.|.|:|.||||:||..:||||:.::|||||:||::.
Zfish   205 HDVIPISCLTEFPNVIQMAKLVCEEVNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGVIYQKFA 269

  Fly   453 QTTEEELFGNQQTSPAFDEFLDVLGQRIRLKDHKGYRGGLDIQNGHTGDTAVYEVFKEREIMFHV 517
            ||:|||||||.:.||||.|||:.||::|.|.|.||:|||||:.:|.||..:||..|..:||||||
Zfish   270 QTSEEELFGNNEESPAFVEFLEFLGEKIDLHDFKGFRGGLDVTHGQTGTESVYVNFHNKEIMFHV 334

  Fly   518 STLLPHTEGDPQQLQRKRHIGNDIVAIVFQETNTPFSPDMIASHFLHAFIVVQPIEPNTPHTRYK 582
            ||.||:||||.||||||||||||||||||||.||||.||||||:||||::|||.....|.:..||
Zfish   335 STKLPYTEGDSQQLQRKRHIGNDIVAIVFQEENTPFVPDMIASNFLHAYVVVQVENACTDNVLYK 399

  Fly   583 VSVTARDDVPFFGPTLPNPAVFRKGQEFKEFILTKLINAENACYKAEKFAKLEQRTRTSLLQNLC 647
            ||||||||||||||.||:||||:|..||.||:||||||||.:|||||||||||:|||::||:.|.
Zfish   400 VSVTARDDVPFFGPALPDPAVFKKSSEFHEFLLTKLINAEYSCYKAEKFAKLEERTRSALLETLY 464

  Fly   648 EELREKTRDFLGTDLSQTSAGSPTPETPKAESGSGGNAGSRFIDTVKKALIMRVRSQSVDTGNGH 712
            |||...::..:|..          .:..|.|:|.||..|. |.::.|:  ::|.||||:|   ..
Zfish   465 EELHMNSQSMMGLG----------GDDDKLENGGGGGGGG-FFESFKR--VIRNRSQSMD---AM 513

  Fly   713 GPGQTDKFSVNTKLGTLNSKKETHPEMQTPNLNTCSR-TASKSSSKSKSSNESTSSSPDI----- 771
            |.......:|:|.    :|...||...:||.....|. ...||.::.||...|:..|..|     
Zfish   514 GLSNKKPHTVSTS----HSGSFTHNPPETPKTPGISLIIPGKSPTRKKSGPFSSRRSSAIGIENI 574

  Fly   772 ------TSRQAN-NNNTNSIGGHLPQ-----NGTGGGVVAAAVSAAQNGVVAVATMSETSDDSSL 824
                  :||:.: :...:|.|||:.|     |.:.......|.:...:.:...|.....|.|.|.
Zfish   575 QEVQERSSREVSPSPQRSSDGGHIAQEFRLDNSSNQSSPEMATTKIGSALCCRAPSIPESQDLSR 639

  Fly   825 NSVDLDPMMAHLDGGATYIDSDTGLESMSSAEATTKA-----CSLCLDGVQSTIMGSSP 878
            :|.:.....:.::......|.||||||:|||....|.     .|:.|:...::...|||
Zfish   640 SSSNASSFTSVVEDHEATEDYDTGLESLSSAGTPHKRDSFPYSSVWLEDASASSSQSSP 698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RapGAP1NP_001097114.2 GoLoco 147..168 CDD:280368 11/20 (55%)
Rap_GAP 460..639 CDD:280332 127/178 (71%)
rap1gapbXP_009300955.1 GoLoco 62..82 CDD:280368 11/19 (58%)
Rap_GAP 277..456 CDD:280332 127/178 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170586374
Domainoid 1 1.000 267 1.000 Domainoid score I1827
eggNOG 1 0.900 - - E1_KOG3686
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 465 1.000 Inparanoid score I1513
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D163377at33208
OrthoFinder 1 1.000 - - FOG0002359
OrthoInspector 1 1.000 - - otm25518
orthoMCL 1 0.900 - - OOG6_105084
Panther 1 1.100 - - O PTHR15711
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1559
SonicParanoid 1 1.000 - - X1790
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.790

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