DRSC/TRiP Functional Genomics Resources

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Protein Alignment RapGAP1 and garnl3

DIOPT Version :10

Sequence 1:NP_001097114.2 Gene:RapGAP1 / 34032 FlyBaseID:FBgn0264895 Length:959 Species:Drosophila melanogaster
Sequence 2:XP_031747097.1 Gene:garnl3 / 100486787 XenbaseID:XB-GENE-986411 Length:1021 Species:Xenopus tropicalis


Alignment Length:454 Identity:156/454 - (34%)
Similarity:235/454 - (51%) Gaps:58/454 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   240 LSGVVSASGCQL--LSNGHHYQSQSSVSSNSSIVSAIPASQRLLEEALAKPAPYPMILLPLHGGY 302
            ||.|....||:.  .|..|:...:..:||::.  .||..:.|...|                .|.
 Frog    41 LSSVSEDLGCRRGEFSRKHYGSVELLISSDAD--GAIQRAGRFRVE----------------NGS 87

  Fly   303 WMDGTEHECGYDARGNPLL--PQ--TTWMAKFETDDTAKCYRRFYAAREHSNLIGLDEQLGPILL 363
            ..:.|::..|...|.:..|  |:  |.|            |.:::..:.|.|.:|.|.:..|..|
 Frog    88 SDESTDYTPGTWRRTDVHLENPEYHTRW------------YFKYFLGKVHQNYVGTDAEKNPFFL 140

  Fly   364 SIKTENVANQ---EHMRILMRLRTGTMHELLPVSCLLPQPSPAKMAHTLNENITVEHF----MPI 421
            |:...:..||   ::..||.| :|||....||. |    |:......::...:.::.|    ..|
 Frog   141 SVVLSDQNNQRVPQYRAILWR-KTGTQKICLPY-C----PTKTLSVKSILSAMNLDRFEKSPREI 199

  Fly   422 LCPKASQLISVYDEHVLVSHFKFGVLYQRYGQTTEEELFGNQQTSPAFDEFLDVLGQRIRLKDHK 486
            |.|:..:.:.|.:|.....:|||||||.:.||.|::|:|.|:..|.:|.:.|::||..|.||...
 Frog   200 LNPEIQKDLLVLEEQEGSVNFKFGVLYAKDGQLTDDEMFSNEAGSESFQKMLNLLGDTITLKSWV 264

  Fly   487 GYRGGLDIQNGHTGDTAVYEVFKEREIMFHVSTLLPHTEGDPQQLQRKRHIGNDIVAIVFQ---E 548
            |||||||.:|..||..:||.|::..||||||||:||:::.:.||::||||||||||.||||   |
 Frog   265 GYRGGLDTKNDTTGIHSVYTVYQGHEIMFHVSTMLPYSKENKQQVERKRHIGNDIVTIVFQEGDE 329

  Fly   549 TNTPFSPDMIASHFLHAFIVVQPIEPNTPHTRYKVSVTARDDVPFFGPTLPNPAVFRKGQEFKEF 613
            .::.|.|.||.|||.|.|.:|:   .|..:..|::.:.:.:.||.|||.||:|.||...|||::|
 Frog   330 ASSAFKPSMIRSHFTHIFALVR---YNKQNDSYRLKIFSEESVPLFGPPLPSPPVFTDHQEFRDF 391

  Fly   614 ILTKLINAENACYKAEKFAKLEQRTRTSLLQNLCEELREKTRDFLGTDLSQTSAGSPTPETPKA 677
            :|.||||.|.|..:...||:..|||...|:::|.::|..   |.....|::.|.....||:||:
 Frog   392 LLVKLINGEKATLETPTFAQKRQRTLDMLIRSLYQDLMP---DLHKNMLNRRSFSDVLPESPKS 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RapGAP1NP_001097114.2 GoLoco 147..168 CDD:460481
Rap_GAP 460..639 CDD:460463 87/181 (48%)
garnl3XP_031747097.1 Rap_GAP 238..416 CDD:460463 86/180 (48%)
CNH 515..813 CDD:459938
Blue background indicates that the domain is not in the aligned region.

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