DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6055 and Sell

DIOPT Version :9

Sequence 1:NP_001260199.1 Gene:CG6055 / 34027 FlyBaseID:FBgn0031918 Length:219 Species:Drosophila melanogaster
Sequence 2:XP_038946544.1 Gene:Sell / 29259 RGDID:3655 Length:460 Species:Rattus norvegicus


Alignment Length:212 Identity:45/212 - (21%)
Similarity:76/212 - (35%) Gaps:70/212 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 PRSCANRVRHASYRDARGVS----HSYFFSWE--------------------------------- 55
            |.:.|.|.|....|.|.|::    .:..|.|.                                 
  Rat    33 PCARAQRPRCRRLRPAEGLTEETQQAMVFPWRCQSAQRGSWSFLKLWIWTLLCCDLLPHHGTHCW 97

  Fly    56 --HAPTRSLEVDWLDARNICRRHCMDAVSLETPQENDFVKQRIARGNVRYIWTSGRKCNFAGCDR 118
              |...||:  :|.:||..|:.:..|.|:::..:|.:::::.:.: |..|.|...||..      
  Rat    98 TYHYSERSM--NWENARKFCKHNYTDLVAIQNKREIEYLEKTLPK-NPTYYWIGIRKIG------ 153

  Fly   119 PDLQPPNENGWFWSGSGAKIGPTSQRNTGDWSSTGGYQQPQPDNREAAQGNDESCLSILNNFYND 183
                    ..|.|.|:    ..|..:...:| .||     :|:|::    :.|.|:.|......|
  Rat   154 --------KTWTWVGT----NKTLTKEAENW-GTG-----EPNNKK----SKEDCVEIYIKRERD 196

  Fly   184 GIKWHDVACHHIKPFVC 200
            ..||:|.|||..|..:|
  Rat   197 SGKWNDDACHKRKAALC 213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6055NP_001260199.1 CLECT 50..201 CDD:153057 38/186 (20%)
SellXP_038946544.1 CLECT_selectins_like 97..215 CDD:153062 36/148 (24%)
EGF_CA 218..250 CDD:238011
CCP 255..313 CDD:153056
PHA02817 275..>384 CDD:165167
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.