DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment santa-maria and scarb2

DIOPT Version :10

Sequence 1:NP_609121.2 Gene:santa-maria / 34024 FlyBaseID:FBgn0025697 Length:563 Species:Drosophila melanogaster
Sequence 2:NP_001016557.1 Gene:scarb2 / 549311 XenbaseID:XB-GENE-948022 Length:483 Species:Xenopus tropicalis


Alignment Length:468 Identity:132/468 - (28%)
Similarity:230/468 - (49%) Gaps:49/468 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 WVDLFDWIMHKEMALAPDTRVYENWKSPPIDLSLDIYLYNWTNPEDFGNLS-TKPILEQVGPYRF 100
            ::|:.:..:.:.:.|..::.|:|:|.:||..:.:..|.:|.|||.:.  || .||.::::|||.:
 Frog    29 FMDIVEGQVKQAIVLKNESEVFEDWANPPPPVYMQFYFFNVTNPLEV--LSGEKPFVDEIGPYTY 91

  Fly   101 IERPDKVDIHWHPENASVTYRRRSLFYFDAAGSNGSLD-DEITTLNAVALSAAATAKYWPPVKRS 164
            .|...:.:|.:......|:......:.|:...|.|... |.|.|:|...::.....|. ..:.|.
 Frog    92 REYRPRENITFSVNGTEVSAVTPKTYVFEPEKSIGDPKVDLIRTVNIPLVTILEMTKD-SSLLRP 155

  Fly   165 LVDVGLKMYGAEMSVQKSIDELLFTGYNDAMIDVAMAMPIFGDEVKVPF-----DKFGWFYTRNG 224
            .:...||.|...|.|.:::||||: ||.||::.:..           ||     |.||.||..|.
 Frog   156 FIIAALKTYKEGMFVTRTVDELLW-GYKDAVLSILH-----------PFKKNISDTFGLFYKMNT 208

  Fly   225 SADLTGVFNVFTGADQLAKLGQMHSWNYQENTGFFDS-YCGMTNGSAG-EFQPQHLKPGDSVGLF 287
            :.|  |.:...:|.....:..|:..|..|:...::.: .|.|.||:.| .|.|. |...|::.:|
 Frog   209 TDD--GEYIFLSGEKDYLEFTQIAEWKGQKALNWWTTETCNMINGTDGTSFHPL-LNKDDTIYMF 270

  Fly   288 TPDMCRTIPLDYVETVDIEGLEGYKFSGGPRSV-DNGTQYPENLCFC--GGQCVPSGVMNISSCR 349
            :.|:||:|...|..:.:|:.:..::|| .|.|| .|.:..|:|..||  .|.|:|||::|:|.|:
 Frog   271 SSDLCRSIYAVYESSENIKDISVFRFS-PPASVFANVSVNPQNKGFCVPEGNCLPSGLLNVSICK 334

  Fly   350 FGSPVFMSYPHFFNADPYYPDQVEGLSPNQKDHEFYMVVQPSTGIPLEVAARFQVNMLVEPIQGI 414
            .|:|:.:|.|||:.||....:.:.|:.|.::.|..::.:.|.||..::.|.|.|||:.|..|...
 Frog   335 EGAPIVLSSPHFYQADENVINSIRGMKPVKEHHMTFLDLNPLTGTLIQAAKRIQVNVYVRKINVY 399

  Fly   415 SLYTGIPRIFFPLVWFEQKVRITPDMADQLKVLPIVMLSGHIFAGI-CLIVGITLLCWTPVQILL 478
            .:...|..:|||::...:.|.|....|.:|:   .::..|.:.|.| .:|:|:        .|:|
 Frog   400 LITQDIQTLFFPVMHLNESVLIDDKSAGRLR---SILFQGRVVANIPFIIMGL--------GIIL 453

  Fly   479 A------SCRNRR 485
            |      ||..:|
 Frog   454 AFLFTTLSCLQKR 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
santa-mariaNP_609121.2 CD36 21..476 CDD:460076 126/451 (28%)
scarb2NP_001016557.1 CD36 29..460 CDD:460076 129/460 (28%)

Return to query results.
Submit another query.