DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment santa-maria and scarb2

DIOPT Version :9

Sequence 1:NP_609121.2 Gene:santa-maria / 34024 FlyBaseID:FBgn0025697 Length:563 Species:Drosophila melanogaster
Sequence 2:NP_001016557.1 Gene:scarb2 / 549311 XenbaseID:XB-GENE-948022 Length:483 Species:Xenopus tropicalis


Alignment Length:465 Identity:132/465 - (28%)
Similarity:229/465 - (49%) Gaps:43/465 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 WVDLFDWIMHKEMALAPDTRVYENWKSPPIDLSLDIYLYNWTNPEDFGNLS-TKPILEQVGPYRF 100
            ::|:.:..:.:.:.|..::.|:|:|.:||..:.:..|.:|.|||.:.  || .||.::::|||.:
 Frog    29 FMDIVEGQVKQAIVLKNESEVFEDWANPPPPVYMQFYFFNVTNPLEV--LSGEKPFVDEIGPYTY 91

  Fly   101 IERPDKVDIHWHPENASVTYRRRSLFYFDAAGSNGSLD-DEITTLNAVALSAAATAKYWPPVKRS 164
            .|...:.:|.:......|:......:.|:...|.|... |.|.|:|...::.....|. ..:.|.
 Frog    92 REYRPRENITFSVNGTEVSAVTPKTYVFEPEKSIGDPKVDLIRTVNIPLVTILEMTKD-SSLLRP 155

  Fly   165 LVDVGLKMYGAEMSVQKSIDELLFTGYNDAMIDVAMAMPIFGDEVKVPF-----DKFGWFYTRNG 224
            .:...||.|...|.|.:::||||: ||.||::.:..           ||     |.||.||..|.
 Frog   156 FIIAALKTYKEGMFVTRTVDELLW-GYKDAVLSILH-----------PFKKNISDTFGLFYKMNT 208

  Fly   225 SADLTGVFNVFTGADQLAKLGQMHSWNYQENTGFFDS-YCGMTNGSAG-EFQPQHLKPGDSVGLF 287
            :.|  |.:...:|.....:..|:..|..|:...::.: .|.|.||:.| .|.|. |...|::.:|
 Frog   209 TDD--GEYIFLSGEKDYLEFTQIAEWKGQKALNWWTTETCNMINGTDGTSFHPL-LNKDDTIYMF 270

  Fly   288 TPDMCRTIPLDYVETVDIEGLEGYKFSGGPRSV-DNGTQYPENLCFC--GGQCVPSGVMNISSCR 349
            :.|:||:|...|..:.:|:.:..::|| .|.|| .|.:..|:|..||  .|.|:|||::|:|.|:
 Frog   271 SSDLCRSIYAVYESSENIKDISVFRFS-PPASVFANVSVNPQNKGFCVPEGNCLPSGLLNVSICK 334

  Fly   350 FGSPVFMSYPHFFNADPYYPDQVEGLSPNQKDHEFYMVVQPSTGIPLEVAARFQVNMLVEPIQGI 414
            .|:|:.:|.|||:.||....:.:.|:.|.::.|..::.:.|.||..::.|.|.|||:.|..|...
 Frog   335 EGAPIVLSSPHFYQADENVINSIRGMKPVKEHHMTFLDLNPLTGTLIQAAKRIQVNVYVRKINVY 399

  Fly   415 SLYTGIPRIFFPLVWFEQKVRITPDMADQLKVLPIVMLSGHIFAGICLIV---GITL-LCWTPVQ 475
            .:...|..:|||::...:.|.|....|.:|:   .::..|.:.|.|..|:   ||.| ..:|.: 
 Frog   400 LITQDIQTLFFPVMHLNESVLIDDKSAGRLR---SILFQGRVVANIPFIIMGLGIILAFLFTTL- 460

  Fly   476 ILLASCRNRR 485
                ||..:|
 Frog   461 ----SCLQKR 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
santa-mariaNP_609121.2 CD36 23..474 CDD:279474 129/452 (29%)
scarb2NP_001016557.1 CD36 29..460 CDD:366481 129/452 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11923
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X155
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.110

Return to query results.
Submit another query.