DRSC/TRiP Functional Genomics Resources

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Protein Alignment santa-maria and scarb2c

DIOPT Version :10

Sequence 1:NP_609121.2 Gene:santa-maria / 34024 FlyBaseID:FBgn0025697 Length:563 Species:Drosophila melanogaster
Sequence 2:NP_001352071.1 Gene:scarb2c / 337532 ZFINID:ZDB-GENE-030131-5789 Length:478 Species:Danio rerio


Alignment Length:473 Identity:127/473 - (26%)
Similarity:220/473 - (46%) Gaps:46/473 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 CLGLFGILCGMFWV------------DLFDWIMHKEMALAPDTRVYENWKSPPIDLSLDIYLYNW 77
            |:...|.||.:..:            .|.:..:.:::.|...|..:..|::||..:.:..|.:|.
Zfish     7 CVSTAGALCVLLLICGIALELTRVLQKLVNNTVKQQIVLENGTEAFSVWQNPPPPVYMQFYFFNL 71

  Fly    78 TNPEDFGNLSTKPILEQVGPYRFIERPDKVDIHWHPENASVTYRRRSLFYFDAAGSNGSLDDEIT 142
            |||.:..: ..||.:.|:|||.:.|.....::.:......|.......:.|:...|.||.||.:.
Zfish    72 TNPAEVMS-GDKPSVVQIGPYTYREYRPMEEVKFMDNGTRVAAINPKTYVFEPNMSRGSQDDLVR 135

  Fly   143 TLNAVALSAAATAKYWPPVKRSLVDVGLKMYGAEMSVQKSIDELLFTGYNDAMIDVAMAMPIFGD 207
            |:|..|::  ...||...:...|:...:|..|..:.....:.:||: ||.|.::...        
Zfish   136 TVNIPAVT--VMEKYKDSILARLISDLMKAKGVGVFETFRVGDLLW-GYEDPLLKEL-------- 189

  Fly   208 EVKVPFDKFGWFYTRNGSADLTGVFNVFTGADQLAKLGQMHSWNYQENTGFFDS-YCGMTNGSAG 271
            .:.||.|.||.||.:||:.  ...:.:.||.........:..||.|.:..::.| .|.|.||:.|
Zfish   190 HMLVPDDHFGLFYKKNGTE--YDSYVLLTGKPDYQDFASIDEWNGQRSLNWWSSEECNMINGTDG 252

  Fly   272 -EFQPQHLKPGDSVGLFTPDMCRTIPLDYVETVDIEGLEGYKFSGGPRSVDNGTQY-PENLCFC- 333
             .|.|...| .|.:.:|:.|:||::.:.|...|.::|:.|::|. .|..|.:.... |:|..|| 
Zfish   253 ASFHPIITK-ADRLYIFSSDLCRSLYVQYECDVSVQGVPGFRFV-PPADVFSSPDINPDNAGFCV 315

  Fly   334 -GGQCVPSGVMNISSCRFGSPVFMSYPHFFNADPYYPDQVEGLSPNQKDHEFYMVVQPSTGIPLE 397
             .|.|:.||::|.|.|:.|:|:.||.|||:.||..:.|.:.|:.|.:::|:.:..:.|.|||.|:
Zfish   316 PPGHCLGSGLLNASVCKQGAPIIMSSPHFYQADQKFVDDIWGMKPIKEEHQTFADINPLTGIVLQ 380

  Fly   398 VAARFQVNMLVEPIQGISLYTGIPRIFFPLVWFEQKVRITPDMADQLKV----------LPIVML 452
            .|.|.|||:.::.....|....|..:.||:::..:...|..:.|.:|..          :|.:::
Zfish   381 GAKRVQVNVYLQQHSSFSQTGKIQTLVFPVMYINESAFIDEESAKKLHAVVLNANVVINIPFIVI 445

  Fly   453 SGHIFAGICLIVGITLLC 470
            |..|..||..||   |:|
Zfish   446 SVGILLGIIFIV---LMC 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
santa-mariaNP_609121.2 CD36 21..476 CDD:460076 127/473 (27%)
scarb2cNP_001352071.1 CD36 13..459 CDD:460076 123/464 (27%)

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