DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment santa-maria and Cd36

DIOPT Version :9

Sequence 1:NP_609121.2 Gene:santa-maria / 34024 FlyBaseID:FBgn0025697 Length:563 Species:Drosophila melanogaster
Sequence 2:NP_113749.2 Gene:Cd36 / 29184 RGDID:2301 Length:472 Species:Rattus norvegicus


Alignment Length:497 Identity:135/497 - (27%)
Similarity:248/497 - (49%) Gaps:51/497 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GQKSNRKLIIG-IFGFCLGLFGILCGMFWVDLFDWIMHKEMALAPDTRVYENWKSPPIDLSLDIY 73
            |...|..||.| :.|..|.:||.:.......|.:..:.:|:.|...|..::||......:....:
  Rat     2 GCDRNCGLITGAVIGAVLAVFGGILMPVGDLLIEKTIKREVVLEEGTIAFKNWVKTGTTVYRQFW 66

  Fly    74 LYNWTNPEDFGNLSTKPILEQVGPYRF-IERPDKVDIHWHPENASVTYRRRSLFYFDAAGSNGSL 137
            :::..|||:....|:|..::|.|||.: :....|.:|...|::::|::.:.:...|:.:.|.|:.
  Rat    67 IFDVQNPEEVAKNSSKIKVKQRGPYTYRVRYLAKENITQDPKDSTVSFVQPNGAIFEPSLSVGTE 131

  Fly   138 DDEITTLNAVALSAAA---TAKYWPPVKRSLVDVGLKMYGAEMSVQKSIDELLFTGYNDAMIDVA 199
            :|..|.|| :|::||.   |..:...|..||:    |...:.|...:|:.|||: ||.|..:.: 
  Rat   132 NDNFTVLN-LAVAAAPHIYTNSFVQGVLNSLI----KKSKSSMFQTRSLKELLW-GYKDPFLSL- 189

  Fly   200 MAMPIFGDEVKVPF---DKFGWFYTRNGSADLTGVFNVFTGADQLAKLGQMHSWNYQENTGFFDS 261
                       ||:   ...|.||..|.:.|  ||:.||.|.|.::|:..:.::..:.|..:::|
  Rat   190 -----------VPYPISTTVGVFYPYNNTVD--GVYKVFNGKDNISKVAIIDTYKGKRNLSYWES 241

  Fly   262 YCGMTNGSAGEFQPQHLKPGDSVGLFTPDMCRTIPLDYVETVDIEGLEGYKFSGGPRSVDNGTQY 326
            ||.|.||:.....|..::...::..|:.|:||:|...:...|:::|:..|:|.....:..:..|.
  Rat   242 YCDMINGTDAASFPPFVEKSRTLRFFSSDICRSIYAVFGSEVNLKGIPVYRFVLPANAFASPLQN 306

  Fly   327 PENLCFC-----GGQCVPSGVMNISSCRFGSPVFMSYPHFFNADPYYPDQVEGLSPNQKDHEFYM 386
            |:|.|||     ...|...||::|..|:.|.||::|.|||.:|.|...:.:|||:||:.:|..|:
  Rat   307 PDNHCFCTEKVISNNCTSYGVLDIGKCKEGKPVYISLPHFLHASPDVSEPIEGLNPNEDEHRTYL 371

  Fly   387 VVQPSTGIPLEVAARFQVNMLVEPIQGISLYTGIPRIFF-PLVWFEQKVRITPDMAD-------- 442
            .|:|.||..|:.|.|.|||:||:|.:.|.....:.|.:. |::|..:...|..:.|:        
  Rat   372 DVEPITGFTLQFAKRLQVNILVKPARKIEALKNLKRPYIVPILWLNETGTIGDEKAEMFRNQVTG 436

  Fly   443 QLKVLPIVMLSGHIFAGICLIVGITLLCWTPVQILLASCRNR 484
            ::|:|.:|.:         :::|:.::.:....|...:||::
  Rat   437 KIKLLGLVEM---------VLLGVGVVMFVAFMISYCACRSK 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
santa-mariaNP_609121.2 CD36 23..474 CDD:279474 127/471 (27%)
Cd36NP_113749.2 CD36 14..463 CDD:395898 128/477 (27%)
Required for interaction with thrombospondins, THBS1 and THBS2. /evidence=ECO:0000250 93..120 4/26 (15%)
Interaction with PTK2, PXN and LYN. /evidence=ECO:0000250|UniProtKB:P16671 460..472 3/10 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X155
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

Return to query results.
Submit another query.