DRSC/TRiP Functional Genomics Resources

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Protein Alignment santa-maria and Scarb1

DIOPT Version :9

Sequence 1:NP_609121.2 Gene:santa-maria / 34024 FlyBaseID:FBgn0025697 Length:563 Species:Drosophila melanogaster
Sequence 2:XP_038945027.1 Gene:Scarb1 / 25073 RGDID:2302 Length:516 Species:Rattus norvegicus


Alignment Length:402 Identity:120/402 - (29%)
Similarity:191/402 - (47%) Gaps:65/402 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 PPVKRSLVDVGLKMYGAEMSVQKSIDELLFTGYNDAMIDVAM-----AMPIFGDEVKVPFDKFGW 218
            |...:.|:.:||...|....:.:::.|:|: ||.|..::...     ..||.|        |||.
  Rat   159 PTSLKLLMTLGLVTMGQRAFMNRTVGEILW-GYEDPFVNFLSKYFPDMFPIKG--------KFGL 214

  Fly   219 FYTRNGSADLTGVFNVFTGADQLAKLGQMHSWNYQENTGFFDS-YCGMTNGSAGEFQPQHLKPGD 282
            |...|.|:  :|||.||||....:|:..:..||......::.| .|.|.||:||:.....:.|..
  Rat   215 FVGMNDSS--SGVFTVFTGVQNFSKIHLVDKWNGLSEVNYWHSEQCNMINGTAGQMWAPFMTPES 277

  Fly   283 SVGLFTPDMCRTIPLDYVETVDIEGLEGYKFSGGPRSVDNGTQYPENLCFCGGQCVPSGVMNISS 347
            |:..|:|:.||::.|.|.|:...||:..|:|:.......||:.||.|..||  .|..||:.|:|:
  Rat   278 SLEFFSPEACRSMKLTYQESRVFEGIPTYRFTAPDTLFANGSVYPPNEGFC--PCRESGIQNVST 340

  Fly   348 CRFGSPVFMSYPHFFNADPYYPDQVEGLSPNQKDHEFYMVVQPSTGIPLEVAARFQVNMLVEPIQ 412
            ||||:|:|:|.|||:||||...:.|.||:|:.|:|..::.:.|.||||:..:.:.|:::.::.::
  Rat   341 CRFGAPLFLSQPHFYNADPVLSEAVLGLNPDPKEHSLFLDIHPVTGIPMNCSVKMQLSLYIKSVK 405

  Fly   413 GISLYTGIPRIFFPLVWFEQK----VRITPDMADQLKVLPIVMLSGHIFAGICLIVGITLLCWTP 473
            |:.....|..:..||:||||.    .:.......||.::|.|:   |....:.|.:|..||.   
  Rat   406 GVGQTGKIEPVVLPLLWFEQSGMMGGKTLNTFYTQLVLMPQVL---HYAQYVLLGLGGLLLL--- 464

  Fly   474 VQILLASCRNRRYDLRTKTKTNGQYKSRSQFSSAEELKSKASTLVCEKSVKGSPD-------SSP 531
            |.|:        |.||::.|                     ..|....|.|||.|       |..
  Rat   465 VPII--------YQLRSQEK---------------------CFLFWSGSKKGSQDKEAMQAYSES 500

  Fly   532 LLEKGRKPTIIK 543
            |:....|.|:::
  Rat   501 LMSPAAKGTVLQ 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
santa-mariaNP_609121.2 CD36 23..474 CDD:279474 104/324 (32%)
Scarb1XP_038945027.1 CD36 <148..454 CDD:395898 100/310 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342075
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3776
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG45589
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11923
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X155
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
98.860

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