DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment santa-maria and scav-4

DIOPT Version :10

Sequence 1:NP_609121.2 Gene:santa-maria / 34024 FlyBaseID:FBgn0025697 Length:563 Species:Drosophila melanogaster
Sequence 2:NP_510157.2 Gene:scav-4 / 181429 WormBaseID:WBGene00008692 Length:560 Species:Caenorhabditis elegans


Alignment Length:575 Identity:123/575 - (21%)
Similarity:209/575 - (36%) Gaps:121/575 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 FCLGLFGILCGMFWVDLFDWIMHKEMAL-------APDTRVYENWKSPPIDLSLDIYLYNWTNPE 81
            |.||:|.::  .|.:.:|..|:..::.|       .|....|  |...|.......:|:|.|||:
 Worm    17 FALGIFLLI--PFPIAIFQSIVDSQVYLQQKSDGQLPTGTFY--WSKIPAVQIWTFHLFNVTNPD 77

  Fly    82 DFGNLSTKPILEQVGPYRFIERPDKVDIHWHPENASVTYRRRSLFYFDAAGS--NGSLDDEITTL 144
            :.......|.:.::|||.:.|...|....:...:..:.|.....:.:|...|  :..|.|.:...
 Worm    78 EVLYYGATPNMLEIGPYTYTETEFKDFTQFRDNDNEIFYVNNKTWVYDPTRSCEDCKLSDSVQFA 142

  Fly   145 NAVALSAAATAKYWP--PVKRSLVDVGLKMYGAEMSVQKSIDELLFTGYNDAMID------VAMA 201
            |...:|......|.|  |:....:||...:.|.:.....:....||.||||.:|.      |.:.
 Worm   143 NTAYMSTVFMQIYQPAGPIVGFGLDVLTILLGEQPLRTVTAGGTLFDGYNDPLITLINSPLVKVL 207

  Fly   202 MPIFGDEVKVP-FDKFGWFYTRNGSADLTGVFNVFTGADQLAKLGQMHSWN--------YQENTG 257
            :.:.|:.|::| ....|:|...:.:.|  |.:.:.||.|....:||:.:||        ..|:|.
 Worm   208 LSVLGNPVQLPQVPAAGFFPHYSHTCD--GNYTIRTGKDNTDYVGQIKTWNGLTHLPWWKTEDTS 270

  Fly   258 FFDSYCGMTNGSAGEFQPQHLKPGDSVGLFTPDMCRTIPLDYVETVDIEGLEGYKFSGGPRSVD- 321
            .....|.      |..|...::..|:|..|...:||...|.|.|:..:..:..|.|.....|.| 
 Worm   271 DLRGTCD------GTIQKPGIQKTDTVVQFQSFLCRKYNLHYHESKTVNSIPTYGFKVEDDSYDA 329

  Fly   322 ------------------------NGTQYPENLC----------FCGGQC----------VPSGV 342
                                    |.|:.....|          ||...|          :|.|:
 Worm   330 IKNPGYRYENFEKVNYFPNWPCGLNHTKQNNGNCALVDCNQYDNFCNACCDGSHVNGTYVMPPGM 394

  Fly   343 MNISSCRFGSPV------FMSYPHFFNADPYYPDQVEGLSPNQKDHE---FYMVVQPSTGIPLEV 398
            :. ..|..|..|      .:|.|||:.|.....:.:.|:.|:.:.|.   ||  :.|:||  ..:
 Worm   395 VP-QRCLPGQMVPTPFGAILSAPHFYGAPKVVTESMVGIHPDPELHRPGTFY--INPATG--STI 454

  Fly   399 AARFQVNMLVEPIQGI--SLYTGIPRIFFPLVWFEQKVRITPDMA------DQLKVLPIVMLSGH 455
            ...|::.:.:...|.:  :|.:..|....|.......| :..|.|      :.:.:..||:..|.
 Worm   455 GGEFRMMLSIPVFQSLAWTLMSNAPNAIMPSFTLTIGV-VMKDYAVNYIYFNTVTIPNIVLGLGI 518

  Fly   456 IFAGICLIVGITLLCWTPVQILLASC--RNRRYDLRTKTKTNGQYKSRSQFSSAE 508
            .|..:.|   |.:|.|       ..|  |::|   ..|.....|:::...:|.||
 Worm   519 GFTAVSL---IAVLLW-------GFCYFRSKR---NAKPFVLQQHRTEPTWSVAE 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
santa-mariaNP_609121.2 CD36 21..476 CDD:460076 115/539 (21%)
scav-4NP_510157.2 CD36 14..535 CDD:460076 115/545 (21%)

Return to query results.
Submit another query.