DRSC/TRiP Functional Genomics Resources

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Protein Alignment muc and lat1

DIOPT Version :9

Sequence 1:NP_001260196.1 Gene:muc / 34021 FlyBaseID:FBgn0283658 Length:512 Species:Drosophila melanogaster
Sequence 2:NP_587755.1 Gene:lat1 / 2538797 PomBaseID:SPCC794.07 Length:483 Species:Schizosaccharomyces pombe


Alignment Length:504 Identity:223/504 - (44%)
Similarity:311/504 - (61%) Gaps:38/504 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 NATYVRR-STGNVVVRALSSQLINSRKLQSIRSKLNTSQSPVTWSYNFARAYA--NLPEHIRVPL 85
            :|..:|| ..|..|.|.|   |:::.|:|..:|.|    .||  ....||.||  |.|.|..:.:
pombe     3 SANMLRRMHHGVAVTRML---LVSNGKVQVKKSAL----YPV--MAKLARTYATKNYPAHTVINM 58

  Fly    86 PALSPTMERGSIVSWEKKEGDKLNEGDLLCEIETDKATMGFETPEEGFLAKILIQGGTKDVPVGQ 150
            |||||||..|:|.:::||.|||:..||:|||||||||.:.||..:||:||||||:.||||||||:
pombe    59 PALSPTMTTGNIGAFQKKIGDKIEPGDVLCEIETDKAQIDFEQQDEGYLAKILIETGTKDVPVGK 123

  Fly   151 LLCIIVPDQGSVAAFANFK-DDGAAAAPAAPAAAPAPAPAAAAAPPPPPPPAAAPAAAAPPPAPA 214
            .|.:.|.::|.|||.|:|. :|.:|..|:|.:.....||             ::...:....:|:
pombe   124 PLAVTVENEGDVAAMADFTIEDSSAKEPSAKSGEEKSAP-------------SSEKQSKETSSPS 175

  Fly   215 AAPAAAGTGRVYASPMAKRLAEAQQLRL-QGKGSGVHGSIKSGDLAGQK----------AAAKPA 268
            .........||:|||:|::|||.:.|.| |.:|||.:|.|...|:...|          ||||..
pombe   176 NVSGEERGDRVFASPLARKLAEEKDLDLSQIRGSGPNGRIIKVDIENFKPVVAPKPSNEAAAKAT 240

  Fly   269 AAAPAKAPRAAGARYEDIPVTNMRAVIAKRLLESKTQLPHYYVTVQCQVDKLLKFRAKVNKKYEK 333
            ..|.:.|..||...|||:|::|||.:||.||.|||...|||||||...::|:::.||.:|...:.
pombe   241 TPAASAADAAAPGDYEDLPLSNMRKIIASRLAESKNMNPHYYVTVSVNMEKIIRLRAALNAMADG 305

  Fly   334 QGARVSVNDFIIKAVAIASLKVPEANSAWMDTVIRKYDDVDVSVAVSTDKGLITPIVFNADRKGV 398
            : .::||||.:|||...|..:|||.|:|||...||:|.:||:|:||:|..|||||::.|....|:
pombe   306 R-YKLSVNDLVIKATTAALRQVPEVNAAWMGDFIRQYKNVDISMAVATPSGLITPVIRNTHALGL 369

  Fly   399 LEISKDVKALAAKARDNKLQPHEFQGGTISVSNLGMFGVNQFAAVINPPQSCILAIGTTTKQLVA 463
            .|||...|....:||:|||:|.|:||||.::||||||.|:||.|:|||||:||||:|||...:|.
pombe   370 AEISTLAKDYGQRARNNKLKPEEYQGGTFTISNLGMFPVDQFTAIINPPQACILAVGTTVDTVVP 434

  Fly   464 DPDSLKGFKEVNMLTVTLSADHRVVDGAVAARWLQHFRDYMEDPSNMVL 512
            |..|.||||...::..|||:||||||||:|||:....:..:|:|..::|
pombe   435 DSTSEKGFKVAPIMKCTLSSDHRVVDGAMAARFTTALKKILENPLEIML 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mucNP_001260196.1 PDHac_trf_mito 83..512 CDD:273567 201/440 (46%)
lipoyl_domain 83..155 CDD:133458 44/71 (62%)
2-oxoacid_dh 299..512 CDD:278621 106/212 (50%)
lat1NP_587755.1 lipoyl_domain 54..127 CDD:133458 44/72 (61%)
PDHac_trf_mito 55..483 CDD:273567 201/441 (46%)
E3_binding 187..220 CDD:280908 15/32 (47%)
2-oxoacid_dh 271..483 CDD:278621 106/212 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 236 1.000 Domainoid score I478
eggNOG 1 0.900 - - E1_COG0508
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6814
Inparanoid 1 1.050 375 1.000 Inparanoid score I434
OMA 1 1.010 - - QHG62888
OrthoFinder 1 1.000 - - FOG0001572
OrthoInspector 1 1.000 - - oto100749
orthoMCL 1 0.900 - - OOG6_101258
Panther 1 1.100 - - LDO PTHR23151
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R863
SonicParanoid 1 1.000 - - X2175
TreeFam 1 0.960 - -
1413.860

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