DRSC/TRiP Functional Genomics Resources

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Protein Alignment gudu and PUB18

DIOPT Version :10

Sequence 1:NP_609111.1 Gene:gudu / 34014 FlyBaseID:FBgn0031905 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_172526.1 Gene:PUB18 / 837597 AraportID:AT1G10560 Length:697 Species:Arabidopsis thaliana


Alignment Length:558 Identity:113/558 - (20%)
Similarity:201/558 - (36%) Gaps:154/558 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 SKDKRQVAAED-----------SDTTEVESSTDEE--ERWKEVARAAEIPADYYNIQKL-VKYIK 78
            :.|||.|::.:           .|..|:....|..  .:|.:..:......:..:.::| .|..|
plant   174 TNDKRAVSSINRILALFVNRVVPDPDEINRILDHVGIRKWGDCVKEINFLGEEIDAERLDEKKKK 238

  Fly    79 AGNQTATIVSL------C-CL-------------------KDYDLSTQINQFAISDIGGLDVLVN 117
            :.:|...:.||      | |:                   ||:||           |.||.|   
plant   239 SSDQVELLSSLMGFICYCRCIILGRIERDDHHNHHEDGIKKDHDL-----------IRGLKV--- 289

  Fly   118 ILECSDTKCCLGALKVLSDITLNIDI-----RKTIVDLDG-----IPLIVDILNSSMKDLKTMAA 172
                .|..|.: :|::::|..: |:.     |.:|....|     .|:...||.|:         
plant   290 ----EDLLCPI-SLEIMTDPVV-IETGHTYDRSSITKWFGSGNITCPITGKILTST--------- 339

  Fly   173 ETLANVCKVRLARKYVRTCGGIPKLVDLIDIKLSILKTPRDQLSPDDL--ESLDMTRAGAR-ALF 234
            |.:.||...::.||:.:|.|            :.:....|.:.|.||:  |||....||.. |.|
plant   340 ELVDNVSVRQVIRKHCKTNG------------IVLAGISRRRKSHDDVVPESLAAKGAGKLIAKF 392

  Fly   235 TLADSKHNMEQMRKSGIVPLMAQLLKSCHIDVVIPIMGTVRKCSSEPKFQLAITTEGMIPDIVSH 299
            ..::..:..|:|....:..:..|...|          ...|.|         :...|.:..::..
plant   393 LTSELINGGEEMIYRAVREIRVQTKTS----------SFNRSC---------LVKAGAVTPLLKL 438

  Fly   300 LSSENTELKMEGSTAIYKCAFDGTTRDLVREAG-GLEPLVTIIKDKNVRENKPLLRGATGAIWMC 363
            |||.:..::......|...:...|.:..:  || ||:.||.|:.:....|.:  |..|:...::.
plant   439 LSSVDIRIQENAMAGILNLSKHVTGKSKI--AGEGLKILVEILNEGAKTETR--LYSASALFYLS 499

  Fly   364 AVTDANVKVLDQLRTVNHLVALL--NDECDEVLTNVTGAISECVRFQSNREQLRQAGGLPAMVSL 426
            :|.|.:..:.:....:..|:.::  :|..|....:...|:...:....|..::..||.:|.::.|
plant   500 SVEDYSRLIGENPDAIPGLMNIVKGDDYGDSAKRSALLAVMGLLMQSDNHWRVLAAGAVPILLDL 564

  Fly   427 LNSSH------APLLENLAKGLKECAEDPD---------SMRILEDLDAVRLIWSLLKNPTTRVQ 476
            |.|..      |..|..|||    .||.||         .:::     ||:::.|...:|.. |:
plant   565 LRSGEISGGLTADCLATLAK----LAEYPDGTIGVIRRGGLKL-----AVKILSSSEDSPVA-VK 619

  Fly   477 AHAAYAICPCVRNANDSAELVRSLVGAM---ELVVGLL 511
            .|....|.....|..      |.:||.:   .||:|.|
plant   620 QHCVGLILNLCLNGG------RDVVGVLVKNSLVMGSL 651

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
guduNP_609111.1 armadillo repeat 105..134 CDD:293788 7/28 (25%)
armadillo repeat 144..180 CDD:293788 10/40 (25%)
VRR_NUC <172..232 CDD:451466 16/62 (26%)
SRP1 214..557 CDD:227396 69/322 (21%)
armadillo repeat 245..275 CDD:293788 3/29 (10%)
armadillo repeat 286..318 CDD:293788 5/31 (16%)
armadillo repeat 328..362 CDD:293788 10/34 (29%)
armadillo repeat 411..447 CDD:293788 11/41 (27%)
armadillo repeat 453..484 CDD:293788 6/30 (20%)
armadillo repeat 494..526 CDD:293788 7/21 (33%)
Arm 614..652 CDD:425727
armadillo repeat 619..652 CDD:293788
PUB18NP_172526.1 MLKL_NTD 26..165 CDD:455281
RING-Ubox_PUB 290..341 CDD:438326 12/61 (20%)
Arm 422..458 CDD:425727 7/44 (16%)
armadillo repeat 425..457 CDD:293788 6/40 (15%)
armadillo repeat 465..500 CDD:293788 10/38 (26%)
PLN03200 502..>676 CDD:215629 36/166 (22%)
Blue background indicates that the domain is not in the aligned region.

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