DRSC/TRiP Functional Genomics Resources

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Protein Alignment gudu and PUB12

DIOPT Version :10

Sequence 1:NP_609111.1 Gene:gudu / 34014 FlyBaseID:FBgn0031905 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_001318308.1 Gene:PUB12 / 817432 AraportID:AT2G28830 Length:582 Species:Arabidopsis thaliana


Alignment Length:460 Identity:92/460 - (20%)
Similarity:168/460 - (36%) Gaps:118/460 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SSGTSHNRSRKKKEQCG---SCP---------------------------NRFSKDKRQVAAEDS 39
            |||.::.|...||...|   :||                           |.....||...::.|
plant   204 SSGQTYERECIKKWLEGGHLTCPKTQETLTSDIMTPNYVLRSLIAQWCESNGIEPPKRPNISQPS 268

  Fly    40 DTTEVESST--DEEERWKE--VARAAEIPADYYNIQKLVKYIKAGNQTATIVSLCCLKDYDLSTQ 100
            ......||.  ||..:.:|  :...::.|.|..:....::.:...|..                 
plant   269 SKASSSSSAPDDEHNKIEELLLKLTSQQPEDRRSAAGEIRLLAKQNNH----------------- 316

  Fly   101 INQFAISDIGGLDVLVNILECS-DTKCCLGALKVLSDITLNIDIRKTIVDLDG-IPLIVDILNSS 163
             |:.||:..|.:.:|||:|..| |::....|:..:.::::..:.:..||...| :|.||.:|...
plant   317 -NRVAIAASGAIPLLVNLLTISNDSRTQEHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKG 380

  Fly   164 MKDLKTMAAETLANVCKVRLARKYVRTCGGIPKLVDLIDIKLSILKTPRDQLSPDDLESLDMTRA 228
            ..:.:..||.||.::..:...:..:...|.||.||.|:        :...|....|         
plant   381 SMEARENAAATLFSLSVIDENKVTIGAAGAIPPLVTLL--------SEGSQRGKKD--------- 428

  Fly   229 GARALFTLADSKHNMEQMRKSGIVPLMAQLLKSCHIDVVIPIMGTVRKCSSEPKFQLAITTEGMI 293
            .|.|||.|...:.|..:..::|:||::.:||                   :||:       .||:
plant   429 AATALFNLCIFQGNKGKAVRAGLVPVLMRLL-------------------TEPE-------SGMV 467

  Fly   294 PDIVSHLSSENTELKMEGSTAIYKCAFDGTTRDLVREAGGLEPLVTIIKDKNVRENKPLLRGATG 358
            .:.:|.|             ||.....||.:.  |..|..:..||..|:..:.|..:   ..|..
plant   468 DESLSIL-------------AILSSHPDGKSE--VGAADAVPVLVDFIRSGSPRNKE---NSAAV 514

  Fly   359 AIWMCAVTDANVKVLDQLRTVNHLVALLNDECDEVLTNVTGAISECVRFQSNREQLRQAG-GLPA 422
            .:.:|:....::....:|..::.|:.:..:..|.........::...||  |.:|.:.:| ||..
plant   515 LVHLCSWNQQHLIEAQKLGIMDLLIEMAENGTDRGKRKAAQLLNRFSRF--NDQQKQHSGLGLED 577

  Fly   423 MVSLL 427
            .:||:
plant   578 QISLI 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
guduNP_609111.1 armadillo repeat 105..134 CDD:293788 10/29 (34%)
armadillo repeat 144..180 CDD:293788 11/36 (31%)
VRR_NUC <172..232 CDD:451466 12/59 (20%)
SRP1 214..557 CDD:227396 43/215 (20%)
armadillo repeat 245..275 CDD:293788 5/29 (17%)
armadillo repeat 286..318 CDD:293788 6/31 (19%)
armadillo repeat 328..362 CDD:293788 7/33 (21%)
armadillo repeat 411..447 CDD:293788 6/18 (33%)
armadillo repeat 453..484 CDD:293788
armadillo repeat 494..526 CDD:293788
Arm 614..652 CDD:425727
armadillo repeat 619..652 CDD:293788
PUB12NP_001318308.1 RING-Ubox_PUB 185..237 CDD:438326 9/32 (28%)
armadillo repeat 320..353 CDD:293788 10/32 (31%)
PLN03200 329..>518 CDD:215629 54/249 (22%)
armadillo repeat 361..396 CDD:293788 11/34 (32%)
armadillo repeat 402..436 CDD:293788 12/50 (24%)
armadillo repeat 445..479 CDD:293788 13/72 (18%)
HEAT repeat 531..560 CDD:293787 3/28 (11%)
Blue background indicates that the domain is not in the aligned region.

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