DRSC/TRiP Functional Genomics Resources

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Protein Alignment gudu and pkp4

DIOPT Version :9

Sequence 1:NP_609111.1 Gene:gudu / 34014 FlyBaseID:FBgn0031905 Length:669 Species:Drosophila melanogaster
Sequence 2:XP_690071.3 Gene:pkp4 / 561566 ZFINID:ZDB-GENE-120411-14 Length:1136 Species:Danio rerio


Alignment Length:365 Identity:79/365 - (21%)
Similarity:131/365 - (35%) Gaps:95/365 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   375 QLRTVNHLVALLNDECDEVLTNVTGAISECV---RFQSNREQLRQAGGLPAMVSLLNSSHAPLLE 436
            :|..:.|||.||:.:..||..|..||:...|   ....|:..:|.:||:||:|.||..:....:.
Zfish   515 RLGGIRHLVDLLDHKTLEVQRNACGALRNLVYGKATDDNKVCVRNSGGIPALVRLLRKTPDSEVR 579

  Fly   437 NLAKG----LKECAEDPDSMRILEDLDAVRLIWSLLKNPTTR--VQAHAAYAICP---------- 485
            .|..|    |..|    ||:::....||:        .|.|.  :..|:.:...|          
Zfish   580 ELVTGVLWNLSSC----DSVKMTITRDAL--------GPLTNTVIIPHSGWGAAPQREDQKLKLH 632

  Fly   486 ----------CVRNANDSAE-----------LVRSLVGAMELVVGLLKSKDIMVLSAVCAAIATI 529
                      |:||.:.:.|           |:.||:..::..|........:|.:.||..    
Zfish   633 SSLVLRNTTGCLRNLSSAGEEARRQMRCCEGLIDSLLYIIKTCVNTSDYDSKIVENCVCTL---- 693

  Fly   530 AQDQTNLAILTDLKVIYKLADLVQTTDDLLRMNLAAAVAACACFG-------------------- 574
                .||:...:|::........|..|.||..:.::..|..:|:|                    
Zfish   694 ----RNLSYRLELEMPPSRLMGTQDLDTLLGPDTSSKQADYSCWGLRKKKKKRSWQDQQWDGVGP 754

  Fly   575 --------NNTEELGRLRTVTPIVTYMT-SDNPLVHRSTAMALEKLSMDPQNCITMHQSGV---- 626
                    ...|.|.....|.|.:|.:. |.||......|.:|:.||.......:..::.|    
Zfish   755 IPGFSGSPKGAEMLWHPSVVKPYLTLLAESSNPATLEGAAGSLQNLSAGTWRFASYIRAAVRKEK 819

  Fly   627 -VPFLLECIGSTNKELQLAAAGCLRNIRELALRAEEYLLK 665
             :|.|:|.:...|..:..:.|..|||: .|..|.:|.:.|
Zfish   820 GLPILVELLRMDNDRVVCSVATALRNM-ALDARNKELIGK 858

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
guduNP_609111.1 armadillo repeat 105..134 CDD:293788
armadillo repeat 144..180 CDD:293788
Arm_3 214..557 CDD:330530 48/221 (22%)
armadillo repeat 245..275 CDD:293788
armadillo repeat 286..318 CDD:293788
armadillo repeat 328..362 CDD:293788
armadillo repeat 411..447 CDD:293788 12/39 (31%)
armadillo repeat 453..484 CDD:293788 5/32 (16%)
armadillo repeat 494..526 CDD:293788 8/42 (19%)
ARM 614..652 CDD:214547 8/42 (19%)
armadillo repeat 619..652 CDD:293788 8/37 (22%)
pkp4XP_690071.3 DUF966 <105..>252 CDD:283735
ARM 469..591 CDD:237987 24/75 (32%)
armadillo repeat 477..502 CDD:293788
HEAT_2 506..580 CDD:290374 21/64 (33%)
armadillo repeat 510..546 CDD:293788 11/30 (37%)
armadillo repeat 554..589 CDD:293788 10/34 (29%)
armadillo repeat 595..647 CDD:293788 8/59 (14%)
ARM 636..>699 CDD:237987 13/70 (19%)
armadillo repeat 765..802 CDD:293788 11/36 (31%)
ARM 766..893 CDD:237987 25/94 (27%)
armadillo repeat 812..846 CDD:293788 8/33 (24%)
armadillo repeat 853..893 CDD:293788 2/6 (33%)
armadillo repeat 899..934 CDD:293788
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2332
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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