DRSC/TRiP Functional Genomics Resources

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Protein Alignment gudu and jac-1

DIOPT Version :9

Sequence 1:NP_609111.1 Gene:gudu / 34014 FlyBaseID:FBgn0031905 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_001294123.1 Gene:jac-1 / 178451 WormBaseID:WBGene00002175 Length:1256 Species:Caenorhabditis elegans


Alignment Length:550 Identity:111/550 - (20%)
Similarity:209/550 - (38%) Gaps:200/550 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 VPLMAQLLKSCHIDVVIPIMG------------TVRKCSSEPKFQLAITTEGMIPD------IVS 298
            :|..:||          |:||            ...|.:.:|.|...:|...:|.|      :::
 Worm   549 LPAQSQL----------PVMGYDVEFRDLQQDDRWYKVNDQPVFACKMTVGDLIMDHDYQFRVLA 603

  Fly   299 HLSSENTE-------LKMEGSTAIYKCAFDGTT--------RDLVR----EAGGLEPLVTIIKDK 344
            |.:|..::       :.:|.||.    .|...|        .|:|:    |..|..||   ::::
 Worm   604 HNASGCSQPSPPSDFVHIEPSTN----RFSSDTMESPHLGHHDVVKYVEAERFGAVPL---LQEE 661

  Fly   345 NVRENKPL---------LRGATGAI-WMCAVTDANVK-VLDQLRTVNHLVALLNDECDEVLTNVT 398
            .|||:.||         ||.|...: |    .|.::| |::.|.:.:.         |:.| |.:
 Worm   662 MVRESPPLPERDDSPPPLRRANNNVQW----RDPSLKEVIEYLSSADK---------DKQL-NAS 712

  Fly   399 GAISECVRFQSN--REQLRQAGGLPAMVSLLNSSHAPLLENLAKGLKECA----EDPDSMRILED 457
            |.:.. :.:..|  :|:.|:.||:|.:::||.|....:.:|....||..:    .|.:.:.::| 
 Worm   713 GYLQH-LTYTDNQIKEETREYGGIPKLIALLRSDTPRIQKNACACLKNLSFGKENDANKLAVME- 775

  Fly   458 LDAVRLIWSLLKNPTTR---VQAHAAYAICPCVRNANDSAELVRSLVGAMELVVGLLKSKDIMVL 519
            .|.||||..:|:  ||.   |:..||.|:...     .||::::.::        |..:.:|:..
 Worm   776 ADGVRLIAEVLR--TTHDASVKEEAAAALWNL-----SSADMLKPVI--------LESATEILSQ 825

  Fly   520 SAVCAAIATIAQDQTNLAILTDLKVIYKLADLVQTTDDLLRMNLAAAVAACACFGNNTEELGRLR 584
            ..:...:|....|.|.          :..:.|.:.:..:|| |::||         :.:...|||
 Worm   826 QVIAPVLAVGTSDPTR----------HFGSTLFKNSTGVLR-NVSAA---------SQQARRRLR 870

  Fly   585 ----TVTPIVTYMTS-------DNPLV---------------------------HRSTAMAL--- 608
                .:..:|.::|.       |:|.|                           |.|::..:   
 Worm   871 DIPNLIEALVHFLTHAIQKSQVDSPTVENAVCLLRNLSYRIQEVVDPNYDPAAAHSSSSKNMKHV 935

  Fly   609 -------------EKLSMDPQNCIT----MHQSGVVPFLLECI-GSTNKELQLAAAGCLRNIR-- 653
                         :|...:|:|.:|    :.|..||...|:.: .|:|.|...|:||.::|:.  
 Worm   936 ASPKPEKKKKDKEKKKDKNPKNIVTGPSVLWQPHVVKLYLKLLQDSSNIETLEASAGAIQNLAAC 1000

  Fly   654 --------ELALRAEE------YLLKIDDD 669
                    ..|:|.|:      .|:::.:|
 Worm  1001 QFPPSAEVRAAVRVEKGLPVLVELIRLPED 1030

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
guduNP_609111.1 armadillo repeat 105..134 CDD:293788
armadillo repeat 144..180 CDD:293788
Arm_3 214..557 CDD:330530 76/361 (21%)
armadillo repeat 245..275 CDD:293788 6/34 (18%)
armadillo repeat 286..318 CDD:293788 8/44 (18%)
armadillo repeat 328..362 CDD:293788 13/47 (28%)
armadillo repeat 411..447 CDD:293788 11/39 (28%)
armadillo repeat 453..484 CDD:293788 13/33 (39%)
armadillo repeat 494..526 CDD:293788 3/31 (10%)
ARM 614..652 CDD:214547 13/42 (31%)
armadillo repeat 619..652 CDD:293788 11/37 (30%)
jac-1NP_001294123.1 FN3 205..294 CDD:238020
FN3 313..403 CDD:238020
FN3 428..513 CDD:238020
FN3 528..619 CDD:238020 14/79 (18%)
ARM 688..807 CDD:237987 35/141 (25%)
armadillo repeat 693..718 CDD:293788 7/35 (20%)
armadillo repeat 726..762 CDD:293788 11/35 (31%)
armadillo repeat 770..805 CDD:293788 13/37 (35%)
armadillo repeat 819..858 CDD:293788 7/49 (14%)
ARM 849..>918 CDD:237987 13/78 (17%)
armadillo repeat 876..907 CDD:293788 5/30 (17%)
armadillo repeat 911..999 CDD:293788 17/87 (20%)
ARM 964..1065 CDD:237987 15/66 (23%)
armadillo repeat 1009..1043 CDD:293788 4/21 (19%)
armadillo repeat 1051..1093 CDD:293788
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2332
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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