DRSC/TRiP Functional Genomics Resources

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Protein Alignment gudu and hmp-2

DIOPT Version :9

Sequence 1:NP_609111.1 Gene:gudu / 34014 FlyBaseID:FBgn0031905 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_001252425.1 Gene:hmp-2 / 173338 WormBaseID:WBGene00001979 Length:704 Species:Caenorhabditis elegans


Alignment Length:461 Identity:101/461 - (21%)
Similarity:176/461 - (38%) Gaps:119/461 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   249 SGIVPLM---AQLLKSCHIDVVIPIMGTVRKCSSEPKFQLAITTEG-------MIPDIVSHLSSE 303
            :.||.:|   .|.||...:|:                    :|.||       .:||:|..:...
 Worm    72 TSIVEMMQMPTQQLKQSVMDL--------------------LTYEGSNDMSGLSLPDLVKLMCDH 116

  Fly   304 NTELKMEGSTAIYKCAFDGTTRDLVRE------AGG------LEPLVTIIKDKNVRENKPLLRGA 356
            :..:.   :.|:::...      |.||      |.|      :|.|:...|..||.    :.|.|
 Worm   117 DESVV---ARAVHRAYM------LSREDPNFFNAPGFDHRSFVEALMAASKSSNVN----VRRNA 168

  Fly   357 TGAIWMCAVTDANVKVLDQLRTVNHLVALLNDECDEV-------LTNVTGAISECVRFQSNREQL 414
            .||:...:.......::.:...:..::.:|.|..:.|       |.|:...:|:      :|.|.
 Worm   169 IGALSHMSEQRGGPLLIFRSGGLAEIIRMLYDSLESVVHYAVTTLRNLLMHVSD------SRAQA 227

  Fly   415 RQAGGLPAMVSLLNSSHAPLLENLAKGLKECAED--PDSMRILEDLDAVRLIWSLLKNPT----- 472
            |....:.|:...|:.::..||..:|.||.....|  |..:..| .|...:::.|:|:..:     
 Worm   228 RALNAVEALTPHLHKTNPKLLAQVADGLYFLLIDDAPSKITFL-SLLGPQILVSILREYSDHRKL 291

  Fly   473 --TRVQAHAAYAICPCVRNANDSAELVRSLVGAMELVVGLLKSKDIMVLSAVCAAIATIAQDQTN 535
              |.|:...:.::||    :|..|.:  ||.....|.|.|..:||....:|:..|:..::...||
 Worm   292 IYTVVRCIRSLSVCP----SNKPALI--SLGCLPALYVELCTAKDERSQTAILVAMRNLSDSATN 350

  Fly   536 LAILTDLKVIYKLADLVQTTDDLLRMNLAAAVAACACFG-------NNTEELGRLRTVTPIVTYM 593
            ...||.|  |.||.::::..:|        .:.|||| |       |||.....:.:...|...:
 Worm   351 EENLTQL--IIKLLEIIRVAND--------GMTACAC-GTLSNLTCNNTRNKQTVCSHGGIDALV 404

  Fly   594 TSDN--PLVHRSTAMALEKLSMDPQNCITMH------QSGV-----VPFLLECIGSTNKELQLAA 645
            |:..  |.|...|..||..|    ::|...|      ||.:     .|.:|:.:.:....:..||
 Worm   405 TAIRRLPEVEEVTEPALCAL----RHCTARHSLAEEAQSELRFCQAFPVILDQLETLRTPVIKAA 465

  Fly   646 AGCLRN 651
            .|.:||
 Worm   466 LGVIRN 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
guduNP_609111.1 armadillo repeat 105..134 CDD:293788
armadillo repeat 144..180 CDD:293788
Arm_3 214..557 CDD:330530 73/345 (21%)
armadillo repeat 245..275 CDD:293788 7/28 (25%)
armadillo repeat 286..318 CDD:293788 7/38 (18%)
armadillo repeat 328..362 CDD:293788 13/45 (29%)
armadillo repeat 411..447 CDD:293788 10/35 (29%)
armadillo repeat 453..484 CDD:293788 6/37 (16%)
armadillo repeat 494..526 CDD:293788 9/31 (29%)
ARM 614..652 CDD:214547 11/49 (22%)
armadillo repeat 619..652 CDD:293788 10/44 (23%)
hmp-2NP_001252425.1 ARM 106..216 CDD:237987 22/122 (18%)
HEAT_2 106..>185 CDD:290374 18/91 (20%)
HEAT repeat 106..137 CDD:293787 7/39 (18%)
HEAT repeat 149..177 CDD:293787 9/31 (29%)
ARM 183..303 CDD:237987 24/126 (19%)
armadillo repeat 185..216 CDD:293788 4/30 (13%)
armadillo repeat 224..260 CDD:293788 10/35 (29%)
armadillo repeat 275..302 CDD:293788 4/26 (15%)
Arm 305..346 CDD:278915 13/46 (28%)
armadillo repeat 309..349 CDD:293788 10/41 (24%)
ARM 357..473 CDD:237987 32/130 (25%)
armadillo repeat 358..383 CDD:293788 9/33 (27%)
armadillo repeat 391..429 CDD:293788 9/41 (22%)
armadillo repeat 438..471 CDD:293788 7/32 (22%)
ARM 518..633 CDD:237987
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2332
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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