DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5149 and lmd-3

DIOPT Version :10

Sequence 1:NP_609110.1 Gene:CG5149 / 34013 FlyBaseID:FBgn0031904 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_505173.2 Gene:lmd-3 / 179225 WormBaseID:WBGene00018700 Length:840 Species:Caenorhabditis elegans


Alignment Length:446 Identity:107/446 - (23%)
Similarity:169/446 - (37%) Gaps:116/446 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 KRETDNLYNSEELRML------ESAYKNASGGALEKLTQDRLVETWS---QTIERSLA---ESTA 59
            ||| .:|...::||..      .||.:|.:|......:.|...:.::   :.:||:..   :|||
 Worm   452 KRE-QSLAKLQDLRRQTAEARENSAKENHAGVFACATSSDEAPDLFAAVDEIMERNRIQSNDSTA 515

  Fly    60 QYLFTPTKPGQQCVNLQLKK-----------------FG-----EPYYIMERGTIDQKMQMLL-G 101
            ..  :|..|....|.|...|                 ||     |.::.:.|...|.....|| .
 Worm   516 SQ--SPILPFYMAVRLTRNKKKKKSSTSSPSYDEDIAFGNKLKREFWFAVPRNQADNIYHFLLQW 578

  Fly   102 SMERSGNDTFNSKQLEQYIYSVI------KSYVHLESTAKNSGIKEWHDLGFNTTERSAATFAKG 160
            |.::.|.||..|...|.  .||:      |.::.|.|.|..|       ||   .|:|...|...
 Worm   579 SPDKYGLDTTTSTTEEP--SSVMSNDGQDKGFIVLGSNADES-------LG---GEKSTPLFGSS 631

  Fly   161 LMRNLGKELEHTMPNDALERWLHVTPQFLQIWREVFSQLYCRHGGSKRNIIKEMEIPILPALCDA 225
            |   |.:|                       |..|.....||    :.::.:|:|:|| |   |.
 Worm   632 L---LNRE-----------------------WELVTVSEMCR----RLSLDQELELPI-P---DG 662

  Fly   226 PQNSHYRPIIELPHVLYINAQLPREHRHKWRFLFSSKINGESFSTMLGKVL----DKGPTLFFIE 286
            ...|.....:.:..|:.|..  ||...:.|..:::|:.:|.|.:||..|:.    |..|.|..|.
 Worm   663 AATSQILDELMIRQVMDILP--PRAEGYPWVNIYNSEKHGFSLATMYRKMAEFDEDLSPVLLIIR 725

  Fly   287 DEDQYIFGGYASETWSVKPQ---FGGDDSSLLYTLS---PAMRCFSATTYN----NHYQYLNLNQ 341
            |..:::||...|.  :::|.   ||..||.||:..:   |..|  ....||    |.| ::|..:
 Worm   726 DTKEHVFGAVVSS--AIRPNDHFFGTGDSCLLWRFTGEVPHTR--ELRQYNWTGDNQY-FVNAAK 785

  Fly   342 QTMPNGLGMGGQFDFWGLWIDCSFGDGQSVESCTTYRDYVQLSKRKQFKIRNMEVW 397
            .::..|.|.|..    |||:|.....|.| :.|.|:.:.......:.|.|:.:|.:
 Worm   786 DSLSIGAGSGRN----GLWLDADLNHGSS-QKCETFDNEPLCGDDQDFIIQFIEAY 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5149NP_609110.1 TLDc 232..400 CDD:214733 47/180 (26%)
lmd-3NP_505173.2 LysM 24..66 CDD:396179
TLDc 666..838 CDD:214733 48/183 (26%)
Blue background indicates that the domain is not in the aligned region.

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