DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ninaC and XIC

DIOPT Version :10

Sequence 1:NP_523503.2 Gene:ninaC / 34012 FlyBaseID:FBgn0002938 Length:1501 Species:Drosophila melanogaster
Sequence 2:NP_172349.2 Gene:XIC / 837394 AraportID:AT1G08730 Length:1538 Species:Arabidopsis thaliana


Alignment Length:1132 Identity:287/1132 - (25%)
Similarity:498/1132 - (43%) Gaps:223/1132 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   323 KRFDEKPEKMYPEDLAALENPVDE----------NIIESLRHRILMGESYSFIGDILLSLNSNEI 377
            |:...|..|:||:|:.|....||:          .::::|:.|..:.|.|::.|:||:::|.   
plant    51 KKVTAKLSKIYPKDVEAPAGGVDDMTKLSYLHEPGVLQNLKIRYELNEIYTYTGNILIAINP--- 112

  Fly   378 KQEFPQEFHA----KYRFKSRSENQPHIFSVADIAYQDMLHHKEPQHIVLSGESYSGKSTNARLL 438
            .|..|..:.|    :|:.....|..||:|:|||:||:.|::..:...|::||||.:||:...::|
plant   113 FQRLPHIYDAHMMQQYKGAPLGELSPHVFAVADVAYRAMINEGKSNSILVSGESGAGKTETTKML 177

  Fly   439 IKHLCYLGDGNRGATGR-VESSI----KAILMLVNAGTPVNNDSTRCVLQYCLTFGKTGKMSGAV 498
            :::|.||| |.....|| ||..:    ..:....||.|..||:|:|......:.|.|.|::|||.
plant   178 MRYLAYLG-GRAVTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAA 241

  Fly   499 FNMYMLEKLRVATTDGTQHNFHIFYYFYDFINQQNQLKEYNLKADRNYRYLRVPPEVPPSKLKYR 563
            ...|:||:.||......:.|:|.||..  ....|.::::|.|...:.:.||        ::.|..
plant   242 IRTYLLERSRVCQISDPERNYHCFYLL--CAAPQEEIEKYKLGHPKTFHYL--------NQSKCF 296

  Fly   564 RDDPEGNVERYREFENILRDIDFNHKQLETVRKVLAAILNIGNIRFRQNGKYAEVENT---DIVS 625
            ......:...|......:..:..:.|:.|.:.:|:||||:||||.|.: ||  ||:::   |..|
plant   297 ELVGISDAHDYLATRRAMDIVGISEKEQEAIFRVVAAILHIGNIDFTK-GK--EVDSSVPKDEKS 358

  Fly   626 RI-----AELLRVDEKKFMWSLTNFIMVKGGIAERRQYTTEEARDARDAVASTLYSRLVDFIINR 685
            :.     ||||..|.|....:|...:|:......:|....:.|..:||.:|.|:||||.|:::::
plant   359 KFHLKTAAELLMCDLKALEDALCKRVMITPEEVIKRSLDPQSAVTSRDGLAKTVYSRLFDWLVDK 423

  Fly   686 INMNMSFPRAVFGDTNA---IIIHDMFGFECFNRNGLEQLMINTLNEQMQYHYNQRIFISEMLEM 747
            ||      :::..|.|:   |.:.|::|||.|..|..||..||..||::|.|:||.:|..|..|.
plant   424 IN------KSIGQDANSRSLIGVLDIYGFESFKTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEY 482

  Fly   748 EAEDIDTINLNFYDNKTALDNLLTKPDGLFYIIDDASRSCQDQDLIMDRVSEK-------HSQFV 805
            ..|.||...:.|.||:..||.:..||.|:..::|:|   |.......:..:.|       |.:|:
plant   483 TKEAIDWSYIEFVDNQDVLDLIEKKPGGIVALLDEA---CMFPKSTHETFANKLYQTFKTHKRFI 544

  Fly   806 K-KHTATEISVAHYTGRIIYDTRAFTDINRDFVPPEMIETFRSSLDESIMLMFTNQLTKAGNLTM 869
            | |.:.|:.:||||.|.::|.:..|.|.|:|:|.||..:...:|....::.:|.         .:
plant   545 KPKLSRTDFAVAHYAGEVLYQSELFLDKNKDYVIPEHQDLLGASKCPFVVGLFP---------PL 600

  Fly   870 PFEAVQHKDESERKSYALNTLSAGCISQVNNLRTLAANFRFTCLTLLKMLSQNANLGVHFVRCIR 934
            |.|.                      |:.:...::.:.|:.....|::.|:...   .|::||::
plant   601 PEET----------------------SKSSKFSSIGSRFKLQLQQLMETLNCTE---PHYIRCVK 640

  Fly   935 ADLEYKPRSFHSDVVQQQMKALGVLDTVIARQKGFSSRLPFDEFLRRYQFLA-----FDFDEPVE 994
            .:...||..|.:..:.||::..|||:.:.....|:.:|.||.||:.|:..|:     .:|||.|.
plant   641 PNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRKPFFEFINRFGLLSPAALEGNFDEKVA 705

  Fly   995 MTKDNCRLLFLRLKMEGWALGKTKVFLRY-YNDEFLARLYELQVKKVIKVQSMMRALLARKR--V 1056
                 |:.:...:.::|:.:||||||||. ...|..||..|:......|:|..:|...|:||  |
plant   706 -----CQKILDNMGLKGYQIGKTKVFLRAGQMAELDARRAEVLSSAAKKIQRRIRTHQAQKRFIV 765

  Fly  1057 KGGKVFKL-----GKKGPEHHD-----VAASKIQKAFRGFRDR-----VRLPPLVNEKSGQLNEN 1106
            .......|     |:...:|:|     .||.||||..|....|     :.:..||.:...:....
plant   766 LRKATISLQAICRGRLSCKHYDNLRREAAAVKIQKNGRRHYSRKSYKKLHVASLVVQTGLRAMAA 830

  Fly  1107 TADFIRPFAKKWREKSIFQ-------VLLHYRAARFQDFVNLSQ--------QVHIYNQRMVA-- 1154
            ...|  .|.|:.:..:|.|       .:.:|:  :.::.|.|||        :..:...:|.|  
plant   831 RKQF--RFRKQTKAATIVQAQWRCHRAISYYK--KLKNGVVLSQTRWRGRLAKRELRKLKMAARE 891

  Fly  1155 -------------GLNKCTRAVPFE---RINMREVNSSQLGPLPVPIKKMPFRLDQI-------- 1195
                         .:.:.|..|..|   |.::.|..:.::..|....::|..::|:.        
plant   892 TGALKEAKDMLEKKVEELTYRVQLEKRSRGDLEEAKTQEILKLKSSFEEMRKKVDETNALLLKER 956

  Fly  1196 ------------PFYDTQYMVDPANSISRQAFPNQLLTQHMEDDEPWDSPLQRNPSMTSCALTYN 1248
                        ...:||.:|:....|       :|:|:.:|..:   ..|:........|:.  
plant   957 EAAKKAAEEAPPVIKETQILVEDTKKI-------ELMTEELESVK---VTLENEKQRADDAVR-- 1009

  Fly  1249 AYKKEQACQTNWDRMGESDNIYNQGYFRDPQQLRRNQMQM-----NMNAYNN---------AYNS 1299
              |.|:|.::..|:..:.:....:|     |||:.:..:|     |:.:.|.         |.|.
plant  1010 --KFEEAQESLEDKKKKLEETEKKG-----QQLQESLTRMEEKCSNLESENKVLRQQAVSMAPNK 1067

  Fly  1300 YNSNYNNQNWGVHRSGSRRNSLKGYAA 1326
            :.|       |..||..:|.|..|:.|
plant  1068 FLS-------GRSRSILQRGSESGHLA 1087

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaCNP_523503.2 STKc_myosinIII_N_like 9..282 CDD:270785
MYSc_Myo21 346..1022 CDD:276848 201/718 (28%)
XICNP_172349.2 Myosin_N 16..60 CDD:460670 2/8 (25%)
MYSc_Myo11 84..728 CDD:276835 201/708 (28%)
DUF5401 <747..1058 CDD:375164 61/333 (18%)
MyosinXI_CBD 1119..1504 CDD:271259
Blue background indicates that the domain is not in the aligned region.

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