DRSC/TRiP Functional Genomics Resources

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Protein Alignment ninaC and ATM1

DIOPT Version :9

Sequence 1:NP_523503.2 Gene:ninaC / 34012 FlyBaseID:FBgn0002938 Length:1501 Species:Drosophila melanogaster
Sequence 2:NP_001154628.2 Gene:ATM1 / 821534 AraportID:AT3G19960 Length:1176 Species:Arabidopsis thaliana


Alignment Length:1065 Identity:244/1065 - (22%)
Similarity:419/1065 - (39%) Gaps:247/1065 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   301 ELSRDVKTLYKEPELFVDRGYVKRFDEKPEKMYP---------EDLAALENPVDENIIESLRHRI 356
            ||.:.:.|..:|..:.:..|.|.:...  |.:.|         :||..|....:.:::.:|.:|.
plant   127 ELGKILSTSGEESVISLPEGKVIKVIS--ETLVPANPDILDGVDDLMQLSYLNEPSVLYNLNYRY 189

  Fly   357 LMGESYSFIGDILLSLNSNEIKQEFPQEFHAKYRFKSRSENQPHIFSVADIAYQDMLHHKEPQHI 421
            .....|:..|.:|:::|..:....:...:...||  .:|...||::::||.|.::|:..:..|.|
plant   190 NQDMIYTKAGPVLVAVNPFKEVPLYGNRYIEAYR--KKSNESPHVYAIADTAIREMIRDEVNQSI 252

  Fly   422 VL----------------SGESYSGKSTNARLLIKHLCYLGDGNRGATGRVESSIKAILMLVNAG 470
            ::                ||||.:||:..|::.:::|..||.|: |....:..:...:....||.
plant   253 IIRCICIHESMTYSISSSSGESGAGKTETAKIAMQYLAALGGGS-GIEYEILKTNPILEAFGNAK 316

  Fly   471 TPVNNDSTRCVLQYCLTFGKTGKMSGAVFNMYMLEKLRVATTDGTQHNFHIFYYFYDFINQQNQL 535
            |..|::|:|......:.|.::||:|||....::|||.||......:.::||||          ||
plant   317 TLRNDNSSRFGKLIEIHFSESGKISGAQIQTFLLEKSRVVQCAEGERSYHIFY----------QL 371

  Fly   536 ---------KEYNLKADRNYRYLRVPPEVPPSKLKYRRDDPEGNVERYREFENILRDIDFNHKQL 591
                     ::.||.:...|:||        .:......:...:.||:...:..|..:..:.:..
plant   372 CAGASPALREKLNLTSAHEYKYL--------GQSNCYSINGVDDAERFHTVKEALDIVHVSKEDQ 428

  Fly   592 ETVRKVLAAILNIGNIRFR--QNGKYAE---------------------VENTDIVSRIAELL-- 631
            |:|..:|||:|.:||:.|.  .|..:.|                     :.:...:|.:|:|:  
plant   429 ESVFAMLAAVLWLGNVSFTVIDNENHVEPVADESFLFHSLGSWCWKQECLLHNMCLSTVAKLIGC 493

  Fly   632 RVDEKKFMWSLTNFIMVKGGIAERRQYTTEEARDARDAVASTLYSRLVDFIINRINMNMSFPRAV 696
            .::|.....|..|..:....|.::  .|..:|.|||||:|.::||.|.|:::.:||.:::..:..
plant   494 NINELTLTLSKRNMRVRNDTIVQK--LTLPQAIDARDALAKSIYSCLFDWLVEQINKSLAVGKRR 556

  Fly   697 FGDTNAIIIHDMFGFECFNRNGLEQLMINTLNEQMQYHYNQRIFISEMLEMEAEDIDTINLNFYD 761
            .|  .:|.|.|::|||.|::|..||..||..||::|.|:|:.:|..|..|...:.||...::|.|
plant   557 TG--RSISILDIYGFESFDKNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWTRVDFED 619

  Fly   762 NKTALDNLLTKPDGLFYIIDDASRSCQDQDLIMDRVSEKHSQ---FVKKHTATEISVAHYTGRII 823
            |:..|.....||.||..::|:.|......||.:....::|.|   ..:.......:|.||.|.:.
plant   620 NQNCLSLFEKKPLGLLSLLDEESTFPNGTDLTLANKLKQHLQSNSCFRGDKGKLFTVVHYAGEVT 684

  Fly   824 YDTRAFTDINRDFVPPEMIETFRS-------SLDESIMLM----FTNQLTKAGNLTMPFEAVQHK 877
            |:|..|.:.|||.:..:.|:...|       :...|:::.    ....|.|||..          
plant   685 YETTGFLEKNRDLLHSDSIQLLSSCSCLLPQAFASSMLIQSEKPVVGPLYKAGGA---------- 739

  Fly   878 DESERKSYALNTLSAGCISQVNNLRTLAANFRFTCLTLLKMLSQNANLGVHFVRCIRADLEYKPR 942
             :|:|.|                   :|..|:.....|::.|   .|...||:|||:.:....|.
plant   740 -DSQRLS-------------------VATKFKSQLFQLMQRL---GNTTPHFIRCIKPNNIQSPG 781

  Fly   943 SFHSDVVQQQMKALGVLDTVIARQKGFSSRLPFDEFLRRYQFLAFDFDEPVEMTKDNCRLLFLRL 1007
            .:...:|.||::..|||:.:.   ||...|......|.::..|.                     
plant   782 VYEQGLVLQQLRCCGVLEVLC---KGPYKRFFIIAILHQFNILP--------------------- 822

  Fly  1008 KMEGWALGKTKVFLRYYNDEFLARLYELQVKKVIKVQSMMRALLAR------KR--------VKG 1058
              |.:.:|.||:|.|......|.......:..:::|||..|...||      ||        |:|
plant   823 --EMYQVGYTKLFFRTGQIGVLEDTRNRTLHGILRVQSSFRGYQARCLLKELKRGISILQSFVRG 885

  Fly  1059 GKVFKLGKKGPEHHDVAA-------SK---------------IQKAFRGFRDRVRLPPLVNEKSG 1101
            .|:.|...:....|..||       ||               ||.|.||:        ||...||
plant   886 EKIRKEFAELRRRHKAAATIQSQVKSKIARIQYKGIADASVVIQSAIRGW--------LVRRCSG 942

  Fly  1102 QLNENTADFIRPFAKKWRE-------KSIF-----QVLLHYRAARFQDFVN--LSQQVHIYNQRM 1152
            .:.     :::....|..|       .|:.     :||....|.|.::..|  |.|::..|..|.
plant   943 DIG-----WLKSGGAKTNELGEVLVKASVLSELQRRVLKAEAALREKEEENDILQQRLQQYENRW 1002

  Fly  1153 VAGLNKCTRAVPFERINMREVNSSQLGPLPVPIKKMPFRLDQIPFYDTQYMVDPANSISRQAFPN 1217
            .....|........:..||.:.||      :.|.|....::           |.|.        |
plant  1003 SEYETKMKSMEEIWQKQMRSLQSS------LSIAKKSLAVE-----------DSAR--------N 1042

  Fly  1218 QLLTQHMEDDEPWDSPLQRNPSMTS 1242
            ...:.:..|...|||...:..|.||
plant  1043 SDASVNASDATDWDSSSNQFRSQTS 1067

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ninaCNP_523503.2 STKc_myosinIII_N_like 9..282 CDD:270785
S_TKc 16..282 CDD:214567
MYSc 327..1034 CDD:214580 183/779 (23%)
MYSc_Myo21 346..1022 CDD:276848 176/739 (24%)
ATM1NP_001154628.2 MYSc 160..847 CDD:214580 181/770 (24%)
MYSc_Myo8 179..835 CDD:276834 176/739 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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